Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02333 ATGTCGAACCCGCAGACCGTGGCACAGGGAGAGGGTGAAGACTTGTCCCCGACAAGTACAACTATTGCGGAGGCTTCGCCCATTCGATATTACACTGAGAACGCAAATGGGCAATCCTCAGTCAAGCCTTATCCACCGCCGACGGCTCTCTATGACGAACTTGTTCAAAATTCCAACCTCTTTTGGGAAAAGCTTCAGTCTTTCCACGAATCCTCTGCTACCAAATTCAAGGTTCCCATTATGGGAGGGAAGCCTCTAGATCTGTATCAACTTTTTATAGAAGTCACATCTCGTGGTGGTCTTGAAAAGgtTATTGGCGACCGAAAATGGAAGGAAGTGATTGCAGTATTAAAATTGCCGAGCAGCATAACCAGTGGATCATTTGTATTACGCAAATACTATCTTTCGTTGCTTTATCACTTCGAGCAGGTTTATTACTTTCGAAGGCAAACTCCTCCTTTCACAATACATGATGCTGTGGATGGAAACCTTGCCAATATTTCGGCTACTAAGGAAGGTGCTGCCGCGAATGATTTACCAAGTCAGGTTACTCCAGTACAGCAGCCTGGCTCTTGGGTGACTGGCACTATTGATAAGAAATTTGACGGAGGATATGTAGTTACGGTGAATCTGGGTTCTGATGAGCTGCAGGGCATACTGTATTATGTTCCCGCCAATGCATCCGAAAGTTCTTACACGGCTGGAATGCCTGCTTCTCATAATAGGAAGAGATCAAGATTGGCACTGCGCGATCCATCTCGCCCCAAGTCAAACAGGAGCGGTtacaatttcttctttgccGAGCATTATGCCAAGCTAAAGCCTTTGTACTCTGGTCAAGAGAGAGCTATAAGCAAAAGGATTGGATATTTGTGGAACAATCTCACAGATGCAGAAAGACAGGTTTACCAGGATAAAGGGCAGAGAGATAAGGAGAGATACAGGACTGAAATGTTGGAGTACAAATCCTCGTGCGATCAAACTCCTCAATA 992 0.4456 MSNPQTVAQGEGEDLSPTSTTIAEASPIRYYTENANGQSSVKPYPPPTALYDELVQNSNLFWEKLQSFHESSATKFKVPIMGGKPLDLYQLFIEVTSRGGLEKVIGDRKWKEVIAVLKLPSSITSGSFVLRKYYLSLLYHFEQVYYFRRQTPPFTIHDAVDGNLANISATKEGAAANDLPSQVTPVQQPGSWVTGTIDKKFDGGYVVTVNLGSDELQGILYYVPANASESSYTAGMPASHNRKRSRLALRDPSRPKSNRSGYNFFFAEHYAKLKPLYSGQERAISKRIGYLWNNLTDAERQVYQDKGQRDKERYRTEMLEYKSSCDQTPQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02333 330 Gene3D - 51 161 IPR036431 GO:0003677
Bva12g02333 330 Pfam ARID/BRIGHT DNA binding domain 59 142 IPR001606 GO:0003677
Bva12g02333 330 SUPERFAMILY HMG-box 243 326 IPR036910 -
Bva12g02333 330 SMART ARID_2 52 142 - -
Bva12g02333 330 SMART bright_3 56 147 IPR001606 GO:0003677
Bva12g02333 330 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 33 328 - -
Bva12g02333 330 Gene3D High mobility group box domain 238 329 IPR036910 -
Bva12g02333 330 CDD HMGB-UBF_HMG-box 255 318 - -
Bva12g02333 330 CDD ARID_HMGB9-like 57 142 IPR045303 GO:0003677
Bva12g02333 330 SMART hmgende2 254 323 IPR009071 -
Bva12g02333 330 SUPERFAMILY ARID-like 54 156 IPR036431 GO:0003677
Bva12g02333 330 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Bva12g02333 330 ProSiteProfiles ARID domain profile. 55 146 IPR001606 GO:0003677
Bva12g02333 330 MobiDBLite consensus disorder prediction 231 256 - -
Bva12g02333 330 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Bva12g02333 330 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 33 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02333 Bva-Chr12 17786074 17790634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02333 49 324 ARID Transcription Factor Family AT3G13350 53.357 1.52e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva12g02333 ARID 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02333 - - qsu:111998428 422.55