Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02332 ATGGAAGAGGTTGTTGAGTTCGAGTCAGGGTCAGCTAGTGCTGACAAGGTCAAGGTCAAGGTTAACGACAAGATCAACcggggagaaaaaaaagaaggttttTGCTCTGCTGAGGCCGAGCTTGAGGGGTCGGGAAGAGTACCTGAACGGCGTCGAATGTGTTTGAagctaaataaaattgaagctgCAGCTATGGGCAATCCTCATGTTCGGGTTTGCCGTATCTGCAAGAAAGAATTTAGTACTGGCAAAGCTCTCGGAGGTCACATGAGAATGCACGCCAAGGATCACAAACAAGAAATcggaaataataataatttgatgtcGGAATCATTGGCTGACGATgatggtaagcagaactgcaGAGTGTGCGGAAAGGATTTCCCATCCATGAAGTCTCTGTTTGGCCACATGAGGAGTCACCCTGAAAGAGAGTGGAGAGGAATTCAACCCCCGGTGCCGGTGCCATCCTCTTGTCCTATTGGGTCGCCGTCGTCGGAGTATTCTACTCTCTCGGATGATCTTCATCCCATAGTTGATTCTTCTTCTGACCATTATGCTGCTGCCGCTGTCCCTGCCACTACAACTAGACCGCACTCTGAGTCTGACTCTGGCTCAGGCTCAGGCTCAGATTACTCTGCAATTGATCTCTCGAGTCGTCTATCAATGGGTTGGTCTGTAACTGCCAAGAGAGGACGCAAAGGCAGTTATGGTTCAGGTTTAAAACCCGGTATTGAACGCCGTACTGAGGAAGCTATGTATCATCTGATGATTCTGGCTTGTGCCAATTCCAATTCCAACCACCTCACTCTCACCCATCAATCTCACTCTGACACTGACACTGACACCGATGATAACAAGATGACTTGGGAGGAGCAGGGAAGTCCTAAAACTGAGAGTACACCCTCAGCCTCACCCGAGAGTAGTAGGAGGATGGTGGTCATGACCAAcaacaagagaagaaggatCAAAAGGATGAAATTGACTGAATTGGAAACTGGTGGGAGTACGGACATCAGTAAAGATCATATTCGGATTCAGAATGAGACCAATAAGCACGTATGCAGTTCATGCAACAAATCATTCCCAACTCACCAAGCTTTGGGTGGGCATCGGTCCAGCCATAACAAATCCAAGATCATTCagaatcagaatcagaatGTTAAGCCGGATGTTGTTGAATCAGAATCATACGATATCCGATTGGATATTGCAACACGAGCTGATGCGGAAGTGATCAACAGTAATGGTAATGGTAATGGTAATGGACACCGGTGTAATATTTGCAACAAGATCTTCTCAACTGGTCAAGCTCTTGGGGGACACAAGAGATGTCACTGGAAGGGCAATGCTGAAACTTCTGAACCTCATGCTAAATCAGCCGAAAACAGCGGAGCTCATCCTcctgattttcttttgggtttaaTTGATCTGAATGAGCTTCCAGCTATGGAGGAGCAACACCAAGAGGTCAATGCCCcatctgcttctgcttctgcttctaaCAAATATTA 1514 0.424 MEEVVEFESGSASADKVKVKVNDKINRGEKKEGFCSAEAELEGSGRVPERRRMCLKLNKIEAAAMGNPHVRVCRICKKEFSTGKALGGHMRMHAKDHKQEIGNNNNLMSESLADDDGKQNCRVCGKDFPSMKSLFGHMRSHPEREWRGIQPPVPVPSSCPIGSPSSEYSTLSDDLHPIVDSSSDHYAAAAVPATTTRPHSESDSGSGSGSDYSAIDLSSRLSMGWSVTAKRGRKGSYGSGLKPGIERRTEEAMYHLMILACANSNSNHLTLTHQSHSDTDTDTDDNKMTWEEQGSPKTESTPSASPESSRRMVVMTNNKRRRIKRMKLTELETGGSTDISKDHIRIQNETNKHVCSSCNKSFPTHQALGGHRSSHNKSKIIQNQNQNVKPDVVESESYDIRLDIATRADAEVINSNGNGNGNGHRCNICNKIFSTGQALGGHKRCHWKGNAETSEPHAKSAENSGAHPPDFLLGLIDLNELPAMEEQHQEVNAPSASASASNKY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02332 504 SUPERFAMILY beta-beta-alpha zinc fingers 423 449 IPR036236 -
Bva12g02332 504 MobiDBLite consensus disorder prediction 275 292 - -
Bva12g02332 504 MobiDBLite consensus disorder prediction 449 504 - -
Bva12g02332 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Bva12g02332 504 MobiDBLite consensus disorder prediction 490 504 - -
Bva12g02332 504 Pfam C2H2-type zinc finger 71 93 - -
Bva12g02332 504 Pfam C2H2-type zinc finger 120 143 - -
Bva12g02332 504 Pfam C2H2-type zinc finger 353 377 - -
Bva12g02332 504 Pfam C2H2-type zinc finger 424 448 - -
Bva12g02332 504 Gene3D Classic Zinc Finger 72 141 - -
Bva12g02332 504 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 418 487 - -
Bva12g02332 504 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Bva12g02332 504 MobiDBLite consensus disorder prediction 293 312 - -
Bva12g02332 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Bva12g02332 504 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 418 487 IPR044653 GO:0003700
Bva12g02332 504 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 11 387 - -
Bva12g02332 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 424 446 IPR013087 -
Bva12g02332 504 SUPERFAMILY beta-beta-alpha zinc fingers 351 381 IPR036236 -
Bva12g02332 504 ProSitePatterns Zinc finger C2H2 type domain signature. 355 375 IPR013087 -
Bva12g02332 504 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Bva12g02332 504 MobiDBLite consensus disorder prediction 271 312 - -
Bva12g02332 504 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 11 387 IPR044653 GO:0003700
Bva12g02332 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 353 380 IPR013087 -
Bva12g02332 504 ProSitePatterns Zinc finger C2H2 type domain signature. 426 446 IPR013087 -
Bva12g02332 504 MobiDBLite consensus disorder prediction 195 211 - -
Bva12g02332 504 MobiDBLite consensus disorder prediction 189 211 - -
Bva12g02332 504 SUPERFAMILY beta-beta-alpha zinc fingers 72 141 IPR036236 -
Bva12g02332 504 SMART c2h2final6 424 446 IPR013087 -
Bva12g02332 504 SMART c2h2final6 119 141 IPR013087 -
Bva12g02332 504 SMART c2h2final6 353 375 IPR013087 -
Bva12g02332 504 SMART c2h2final6 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02332 Bva-Chr12 17783251 17785576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02332 72 154 C2H2 Transcription Factor Family AT2G26940 40.000 6.11e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02332 zf-C2H2_6 6.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02332 - - qlo:115955202 206.838