LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02325	ATGGCTGGGATTGACGATAATGTTGCCCTAACTGGTGACTGGGGTGCTCCTAGTCCAAGTCCAAGAACCTTCTTTAGAATGATAGGTGAAGATAATGACGCAAAACCAATCTCAGGCCCTCCTAGAAATGCTAGAACGGAGGAGCTCTTTATGGGAGTTGAAGATCCCATTGAAACTGGAAAATCCAACATAGAAGATACATTGCAAGATGGTGATTCTGGTGGTCAATTTAGTAACCCAAGTTCCTTTTCTGAGCAAAAGTCAAGGTCACGCGGAGGTCTTGTTGAAAGAATGGCAGCTAGGGCTGGGTTTAacgctccaaagttgaacacTGAAAGCATTAGATCAACTGACCTTTCACTTAATTCTGACATTCGATCTCCTTACTTGACCATACCACCTGGTCTCAGTCCAACGACACTTTTAGACTCCCcagtttttctttcaaattcacTGGCACAACCATCTCCAACAACTGGAAAGTTTCCATTTATTTCAAATGGCAACATTTGGGGTGTAGAATTATCCTCTGATGCTcctaaaaaatgtaaagacAATGGCTTTGATGATATCTACATATCATCATTCGCTTTCAAGCCCACTACAGATTTGGGATCCTCTTTGTACCATGGtgcagaaagaaaaaTGAATTTGACTACTCAACCTCAACAATCCCTTCCTGGTATTCAGGTTCAATCAGAAAATTCTTTCCATTCTCGAAGTGTTGATGCAGTTAAAGTTCAAGCTGAGAATAAAAGTAGTCTACCTCTTCAAGCAGACTTTATTGAGTCACCTCCTCAAAAAGATAATGGAACTAATTTAACCTCAGCTGATCAAAGGGCTTTTGATATGCTTGGTGGCAGTACTGAGCTTTCTATACCGCTTGAGGAGCAAGCAGATGAAGAAGGAGATCAAAGAGGGAATGCGGACTCAATGACTGCCGGTGTTGGTGGTACACCTTCTGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAAGTTAAGGGTAGTGAGTACCCACGAAGTTACTACAAGTGTACACACACAAGTTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATAACAGAGATAATCTATAAAGGTGCTCATAACCATCCCAAACCTTCTCCTAATCGCAGATCAGCCATAGGATCAGTTAATCCTCCTACTGGCATGCAAGTAGACAATCCTGAAGGCAGTGAGCTACCACGTGCTGGTGATGGTGACCTAGGTTGGGCAAGTGCACAAAAGGGAAATATAACTAGAGCTGCTGATTGGAAGCATGACAACATTGAGGTGACATCTTCAGCATCTGTAGGACCTGAATACTGCAACCAGTCTAGCAATTTGCAGACACATAATGGTACTCACTTTGAATCAGGAGATGCAATGGATGCCTCATCTACATTTTCtaatgatgaagatgaagatgatcgAGCTACTCATGGCAGTGTAACATTAGGTTATGATGGGGAAGGAGACGAATCAGAGTCTAAAAGAAGGAAACTCGAATCTTTTGCAACAGAATTGAGTGGAGCCACTAGAGCTATTCGGGAGCCTAGAGTTGTTGTTCAAACTACCAGCGAAGTAGATATCCTAGATGATGGATATCGTTGGCGGAAGTATGGGCAAAAAGTTGTTAAAGGAAATCCCAACCCGAGGAGTTACTATAAGTGCACTAATGCAGGTTGCACTGTAAGAAAGCATGTGGAGAGGGCATCACATGACCTTAAATCCGTGATCACTACATATGAGGGGAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCATATAAATGCTGCTGCTTCTAGTACCGTTGCTGCTCAAGCACCTTCTGTTATTCAATCCCATGTTCATAGAACTGAACCATCACAAGTTTACAACACCATGGGAAGGCTAGAGAGGCCAGCATTGGGCTCATTCAACCTTCCTGGGAGGCAGCAGTTAGGACCTTCTCATGGTCATGGCTTTTCCTTTGGGATGAATCAGCCTGGCATGGCCAATCTGGCCATGGCAGGATTGGGCCCTGCTCAAGCGAAGCTTCCTGTCATGCCCGTTCATCAATTTTTCTCCCAACAACGCCCACCTAACGAAATGGGTTTCATGTTCCCAAAAGGAGAACCAAACGTGGAACCAATTCCAGAACGTGGGCTTAACATGGCAAGTGGTTCATCGGTATATCAAGGAATCATGACTCGGATGCCTCTTGGGCCtcaaatgta	2246	0.4225	MAGIDDNVALTGDWGAPSPSPRTFFRMIGEDNDAKPISGPPRNARTEELFMGVEDPIETGKSNIEDTLQDGDSGGQFSNPSSFSEQKSRSRGGLVERMAARAGFNAPKLNTESIRSTDLSLNSDIRSPYLTIPPGLSPTTLLDSPVFLSNSLAQPSPTTGKFPFISNGNIWGVELSSDAPKKCKDNGFDDIYISSFAFKPTTDLGSSLYHGAERKMNLTTQPQQSLPGIQVQSENSFHSRSVDAVKVQAENKSSLPLQADFIESPPQKDNGTNLTSADQRAFDMLGGSTELSIPLEEQADEEGDQRGNADSMTAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHTSCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRSAIGSVNPPTGMQVDNPEGSELPRAGDGDLGWASAQKGNITRAADWKHDNIEVTSSASVGPEYCNQSSNLQTHNGTHFESGDAMDASSTFSNDEDEDDRATHGSVTLGYDGEGDESESKRRKLESFATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHINAAASSTVAAQAPSVIQSHVHRTEPSQVYNTMGRLERPALGSFNLPGRQQLGPSHGHGFSFGMNQPGMANLAMAGLGPAQAKLPVMPVHQFFSQQRPPNEMGFMFPKGEPNVEPIPERGLNMASGSSVYQGIMTRMPLGPQM	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	373	418	-	-
	Bva12g02325	748	SUPERFAMILY	WRKY DNA-binding domain	319	380	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	Pfam	WRKY DNA -binding domain	539	595	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	Pfam	WRKY DNA -binding domain	322	378	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	62	89	-	-
	Bva12g02325	748	SUPERFAMILY	WRKY DNA-binding domain	530	598	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	298	327	-	-
	Bva12g02325	748	ProSiteProfiles	WRKY domain profile.	533	598	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	Gene3D	WRKY domain	310	381	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	75	639	IPR044810	GO:0003700
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	1	92	-	-
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	447	506	-	-
	Bva12g02325	748	ProSiteProfiles	WRKY domain profile.	322	380	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	Gene3D	WRKY domain	525	591	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	SMART	WRKY_cls	538	597	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	SMART	WRKY_cls	321	379	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bva12g02325	748	PANTHER	WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1	75	639	-	-
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	447	473	-	-
	Bva12g02325	748	MobiDBLite	consensus disorder prediction	383	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02325	Bva-Chr12	17729050	17733997	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g02325	1	743	WRKY Transcription Factor Family	AT5G56270	51.499	0.0	569

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bva12g02325		WRKY	3.8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02325	K18835		-	gmx:100796545	1137.09