Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02318 ATGGCGTCTTCGTCAAGCAGTGGGTTGACATTCAAGCTGCATCCCTTGGTTATAGTGAACATATCGGATCATTATACTCGGGTTAAGTCACAGATGAACCCACCCGCCGTTCCTTCACTgaacaacaacagcaacagcaacagcaCCAATGGTGCAGACGTGATGGCTCCACTACCTCCGAGGGTTTATGGATGCGTGATAGGGGTGCAGAGGGGACGCACTGTCGAGATCTTTAATAGCTTCGAACTCCTTTACGATCCCTCTACCCATTCCCTCGACCGCTCTTTTCTCGAGAAGAAGCAAGAGCTCTACAAGAAGGTATTCCCCCACTTCTATGTACTTGGATGGTATTCGACCGGGAGCGATGCCCAGGAATCGGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCGGTCTACGTTCTTCTCAATCCTTCAATCAATCATGCTCAGAAAGATCTCCCAGTCACTATTTATGAAAGTGAACTGCATGTAATAGATGGGATTCCACAACTTATCTTTGTTCGATCGAGCTATACTATTGAGACTGTTGAAGCAGAACGCATCTCAGTTGATCATGTTGCACATCTTAAGCCATCTGATGGTGGTTCAGCGGCTACACAATTGGCTGCTCACCTTACTGGTATACATAGTGCCATCAAAATGCTGCATAGCAGAATTAAGGTCCTTCATCACTATCTTCTTGCAATGCAGAAAGGCGATGTACCTTGTGAGAATTCTCTATTAAGACAAGTATCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAGTTCCAAGATGATTTCTTGATGGAATACAATGACACGTTATTGATTACTTATCTTGCCATGCTGACCAACTGTTCAAGTGCTATGAATGAACTGGTCGACAAATTCAACACTGCATATGACAGGCATAGCAGAAGGGGTGGAAGAACTGCTTTTATGTG 965 0.4311 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPAVPSLNNNSNSNSTNGADVMAPLPPRVYGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPHFYVLGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02318 321 MobiDBLite consensus disorder prediction 32 53 - -
Bva12g02318 321 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 321 - -
Bva12g02318 321 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 140 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva12g02318 321 CDD MPN_CSN6 9 317 IPR033859 GO:0000338|GO:0008180
Bva12g02318 321 SMART pad1_6 10 167 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva12g02318 321 Pfam Maintenance of mitochondrial structure and function 188 302 IPR024969 -
Bva12g02318 321 ProSiteProfiles MPN domain profile. 30 168 IPR037518 -
Bva12g02318 321 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 321 - -
Bva12g02318 321 Gene3D Cytidine Deaminase, domain 2 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02318 Bva-Chr12 17651827 17665227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02318 2 272 Eukaryotic Initiation Factors Gene Family AT2G39990 21.014 3.14e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02318 K12179 - gmx:100797079 575.859