Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02315 ATGGCGGCGGTGAACCCACAGCCTCTTCAGGCGCGTCCATTCGAGGAACACGGTCGATGCCCGATAACGATCGAGGACGATGACGGTGGGTATGAGGATTGTGATGGGAGTGGTGATGCTATGGATGAGGTGGAAGAGGTCAACAATAGTTCAGTCAGTGTTGCTAACCATGGGGGAGTTGTTATGGCGTCTCGTACTAGTGAGCTAACACTTTCTTTCGAGGGCGAGGTTTACGTGTTTCCTGCTGTGACTCCTGAAAAGGTACAAGCAGTTTTGCTTCTTTTGGGTGGTCGTGATGTTCCAACGGGTGTACCTACCATTGAAGTACCGTTTGATCAAAGTAACAGGGGCATCTGTGACACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCTTTGGTTAGATTTCGGGAAAAACGCAAGGAAAGATgttttgacaagaaaattagATACACTGTGCGAAAAGAGGTGGCACAGAGGATGCATCGAAAGAATGGACAATTTGCATCCTTGAAAGACAATCCAAGTTCATCTAATTGGGATTCTGCAGAGAGTTTCCATCAAGATGGCACTCCTCATTCTGAAACTGTACATAGATGTCGACACTGTGGTGTCAGTGAACATAATACTCCTGCAATGCGCCGTGGACCAGCTGGACCAAGAACGCTATGTAATGCGTGCGGTCTTATGTGGGCAAATAAGGGTACACTGAGAGACCTCAGGAAGGGTGGAAAAAATCTCTCTGTTGAGCAAAGTGAATCGGAGACTCCTTTTGATGTCAAGCCTACTATTCTGGAAGGAGAATCGCCAGGCATCCAGGATGAGCAAGGAACATCTCAGGATCTTTCTAAGGCTGTCACTGAAGGATCTAATAACCATGCTATCAACCCAGATGATGTGGAATTGCCTGAATCTGCTGAACGCTTTGCTAATACCCTGCCATTGGGAATTCATTCTACAGAAAATGATGATGAGCAGGAACCTCTGGTTGAGCTATCTGATCCTTCAGATACAGATATTGACATTCCTGGAAATTTTGATTA 1046 0.4541 MAAVNPQPLQARPFEEHGRCPITIEDDDGGYEDCDGSGDAMDEVEEVNNSSVSVANHGGVVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTIEVPFDQSNRGICDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKDNPSSSNWDSAESFHQDGTPHSETVHRCRHCGVSEHNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLRKGGKNLSVEQSESETPFDVKPTILEGESPGIQDEQGTSQDLSKAVTEGSNNHAINPDDVELPESAERFANTLPLGIHSTENDDEQEPLVELSDPSDTDIDIPGNFD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02315 348 MobiDBLite consensus disorder prediction 167 197 - -
Bva12g02315 348 PANTHER GATA TRANSCRIPTION FACTOR 28 1 348 IPR045280 GO:0006355
Bva12g02315 348 Pfam CCT motif 130 171 IPR010402 GO:0005515
Bva12g02315 348 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g02315 348 Gene3D - 193 254 IPR013088 GO:0006355|GO:0008270
Bva12g02315 348 SMART tify_2 62 97 IPR010399 -
Bva12g02315 348 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Bva12g02315 348 Pfam tify domain 65 96 IPR010399 -
Bva12g02315 348 MobiDBLite consensus disorder prediction 273 295 - -
Bva12g02315 348 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Bva12g02315 348 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 348 - -
Bva12g02315 348 MobiDBLite consensus disorder prediction 170 191 - -
Bva12g02315 348 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Bva12g02315 348 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bva12g02315 348 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Bva12g02315 348 MobiDBLite consensus disorder prediction 245 348 - -
Bva12g02315 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 246 - -
Bva12g02315 348 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02315 Bva-Chr12 17582035 17588123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02315 68 254 Tify Gene Family AT1G51600 55.556 5.21e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva12g02315 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02315 - - pop:7467225 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02315 12 17582035 17588123 Bva12g02315 12 17582035 17588123 ECH