Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02314 ATGTACGGTCACGCCCAGGCAGTGAATATGCCCAGCCAGATCGGCACAGGCGAAGATGACGATGGTTCAGGCGCGGGTGCCGAGTCAATTGAAAACCATCACATTCATTATGAACATACTCTTGAAGATGGTGGCGGTGGAGTTGGTGGCGTCGTTGAGGATGTTAACTCCGATAGTGTATATGCTGCTGCCGGTGCAGGTGATGCTAGCCAGCTTACTCTTTCGTTTCGTGGCCAAGTCTATGTTTTCGACTCAGTTACACCTGATCAgGTTCAAGCGGTATTGTTACTGTTGGGTGGTTGTGAACTATCCTCGGGTTCACAGGGCGTGGACAGAGCACATCAAAATCAGAGGGATGCAATGGATTATCCTGGAAGGTCTAGTCAACCACAACGAGCAGCCTCATTAAGTAGGTTCCgtcagaaaaggaaagagcGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAGGAAGTTGCGCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCATCCAAAAAACAAGAAGGAGAGAATAGTTGGGGTACTGTCCAGGAGTCAGGGCAGGATGAAATTCAATCAGAAACCTCGTGCACGCATTGTGGCACAAGTTCAAAATCTACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGATCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATCGGGGTACTTTGAGGGACCTTTCCAAGAGGAACCAGGAAAATACTCTGGCACTAGTTGAGCAGGTTGATGATAACCAAGCTTTAACAGCCGAGCGATG 797 0.4718 MYGHAQAVNMPSQIGTGEDDDGSGAGAESIENHHIHYEHTLEDGGGGVGGVVEDVNSDSVYAAAGAGDASQLTLSFRGQVYVFDSVTPDQVQAVLLLLGGCELSSGSQGVDRAHQNQRDAMDYPGRSSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQEGENSWGTVQESGQDEIQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQENTLALVEQVDDNQALTAER 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02314 265 MobiDBLite consensus disorder prediction 197 213 - -
Bva12g02314 265 Pfam tify domain 69 99 IPR010399 -
Bva12g02314 265 MobiDBLite consensus disorder prediction 120 141 - -
Bva12g02314 265 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Bva12g02314 265 MobiDBLite consensus disorder prediction 1 28 - -
Bva12g02314 265 MobiDBLite consensus disorder prediction 121 136 - -
Bva12g02314 265 CDD ZnF_GATA 199 245 IPR000679 GO:0006355|GO:0043565
Bva12g02314 265 Gene3D - 190 249 IPR013088 GO:0006355|GO:0008270
Bva12g02314 265 MobiDBLite consensus disorder prediction 197 217 - -
Bva12g02314 265 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 251 - -
Bva12g02314 265 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Bva12g02314 265 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Bva12g02314 265 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Bva12g02314 265 PANTHER GATA TRANSCRIPTION FACTOR 28 1 258 IPR045280 GO:0006355
Bva12g02314 265 Pfam CCT motif 132 174 IPR010402 GO:0005515
Bva12g02314 265 PANTHER GATA TRANSCRIPTION FACTOR 25 1 258 - -
Bva12g02314 265 SMART tify_2 65 100 IPR010399 -
Bva12g02314 265 ProSiteProfiles GATA-type zinc finger domain profile. 194 254 IPR000679 GO:0006355|GO:0043565
Bva12g02314 265 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02314 Bva-Chr12 17575950 17579604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02314 1 255 Tify Gene Family AT4G24470 53.875 4.07e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva12g02314 CCT 3.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02314 - - pvu:PHAVU_008G182900g 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02314 12 17575950 17579604 Bva12g02314 12 17575950 17579604 ECH