Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02292 ATGGCAAGGGAGAAAATCAAGATCAAGAAAATCGACAACGTAACAGCGAGGCAGGTGACTTTCTCTAAGAGGAGGCGAGGGCTCTTCAAGAAGGCACAAGAGCTTGCTGTGCTGTGTGATGCCGAGGTTGGTCTCATCATTTTCTCTGCTACCGGGAAGCTCTTTGATTATGCCAGCTCCAGCATTAAAGATATTATTACAAGATATGAGCTGCACTTTCAAGACGCCAACAAAACGAGCAGACCTTCCCTTGAGCTGCAGCTAGAGCATAGCAGTAATATCAAATTGAGTCAGGAAGTTGCTGAGAAAACCCGCCAACTAAGGCGAATGAAAGGCGAGGATCTTCAAGGAATGAGCTTCGATGAGTTGCAGGAACTAGAGAAAATGCTTGAGACTGGACTTAGCCGTGTGATTGAGACTAAGGATAAACAGATTATGAGTGACATCATTGCACTGCGGCAAAAGGGGATCCAACTGGCAGAAGAGAACGAGAGGCTAGTGCGAAagATGGCGATGTTGGATAAAGGATCAAAAGGAGGTGTGTTGATGATGGATTCGGATTTTGGCATACAGCAGGCGGAAGAAGGTGTGTCGTCAGAATCCATGACGACGACCAACACTGGGAGCTGCATTACTGGGCCTCCTCCCGAGGATGATTCATCTGATACATCGCTCAAGTTAGGGCTTCCCTTCTCATA 698 0.4699 MAREKIKIKKIDNVTARQVTFSKRRRGLFKKAQELAVLCDAEVGLIIFSATGKLFDYASSSIKDIITRYELHFQDANKTSRPSLELQLEHSSNIKLSQEVAEKTRQLRRMKGEDLQGMSFDELQELEKMLETGLSRVIETKDKQIMSDIIALRQKGIQLAEENERLVRKMAMLDKGSKGGVLMMDSDFGIQQAEEGVSSESMTTTNTGSCITGPPPEDDSSDTSLKLGLPFS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02292 232 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bva12g02292 232 Coils Coil 93 113 - -
Bva12g02292 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 227 - -
Bva12g02292 232 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva12g02292 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva12g02292 232 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Bva12g02292 232 MobiDBLite consensus disorder prediction 194 232 - -
Bva12g02292 232 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Bva12g02292 232 MobiDBLite consensus disorder prediction 194 219 - -
Bva12g02292 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Bva12g02292 232 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva12g02292 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02292 Bva-Chr12 17443265 17448169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02292 1 231 MADS-box Gene Family AT2G22540 54.357 9.08e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva12g02292 K-box 4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02292 - - tcc:18591803 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02292 12 17443265 17448169 Bva12g02292 12 17443265 17448169 ECH