Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02288 atgcTTCCTTTCCGGAGTTTCAACGGGTTTGAGAGCTGGCTATTAGATAACAATGGGTGTATTCAAGAACCAAACTCGTTGATCAAGTCATTGGAATTAAACGGAGGAAAACCGATTCTGAACTCGGCGTCAAAGTTGGAGAGGAAATCAACGGAAGCGTGCAAAAGTCACAGGGATGCTGAGAGGAGACGCCGGCAGCGAATCAACGCCCACCTCTCTACTCTGCGCACTCTCCTCCCTAACACAGCCAAGTCAGACAAGGCCTCGTTGCTCGCGGAAGTGGTCCAGCACGTGAAGGAGTTGAGGAAACAGGCTGTTGACGTGGCACGTCGTCACTACGGAAGCTTATCGTGCAGCAGCAGCAGTGGCGAGGCCGGGTCGGAGTCTGCAGAAACTGAGACGTGGCCGTTCCCGGGAGAGTGTGATGAGGCAACTCTGAGTTACTGCGACGATGCTGGCGAACCCAGGCTCCTGAAAGCTACGCTCTGCTGTGAGGACAGACCCAATCTGAACCGGGATCTAATACAGGCAATCCGGTCGGTCCGGGGCAAGGCCGTGCGAGCGGAGATGATGACGGTTGGTGGACGGACCAAGAGCGTTGTGGTAATGCAGTGGCCTGGTCACGGCGGAGAGCAGGATGTTGCAGTACTGGAACGGGCCTTGAAAGCCGTAGTGGAGAATCGCGCTTTAGTGGGACCTAGGATGGGTGGCATAGTGTTGGGCCACAAACGGGCCCGAGCTAACTATAGTTCTCCAATCGAGGATGATAGCGCCTTCGTGATGTA 785 0.549 MLPFRSFNGFESWLLDNNGCIQEPNSLIKSLELNGGKPILNSASKLERKSTEACKSHRDAERRRRQRINAHLSTLRTLLPNTAKSDKASLLAEVVQHVKELRKQAVDVARRHYGSLSCSSSSGEAGSESAETETWPFPGECDEATLSYCDDAGEPRLLKATLCCEDRPNLNRDLIQAIRSVRGKAVRAEMMTVGGRTKSVVVMQWPGHGGEQDVAVLERALKAVVENRALVGPRMGGIVLGHKRARANYSSPIEDDSAFVM 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02288 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Bva12g02288 261 MobiDBLite consensus disorder prediction 117 136 - -
Bva12g02288 261 PANTHER OS09G0463900 PROTEIN 18 249 - -
Bva12g02288 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 105 IPR036638 GO:0046983
Bva12g02288 261 Pfam Helix-loop-helix DNA-binding domain 54 101 IPR011598 GO:0046983
Bva12g02288 261 Gene3D - 46 113 IPR036638 GO:0046983
Bva12g02288 261 SMART finulus 58 107 IPR011598 GO:0046983
Bva12g02288 261 PANTHER TRANSCRIPTION FACTOR BHLH30 18 249 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02288 Bva-Chr12 17428900 17429843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02288 40 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 36.916 2.77e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g02288 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02288 - - gmx:100816394 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02288 12 17428900 17429843 Bva12g02288 12 17428900 17429843 ECH