Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02266 atggagAGAGAAGACATGGAATTTGACGAGCACGAAGAccaagaagaggaagaaatggGGATCCCGGTGCCGCCGCCGGGTTACGACTCGCTCGCCAACTCGGGGCGGTCCAAAATGGGTGCCAGTGACGGAGAGGGAGCTCCATCCACCGTGACAGCTGGCAGGAAAGGCGGGTCCACGGGGATGATCAGGTACAGAGAATGCCAAAAAAACCATGCCGTCAGCATTGGTGGCCACGCCTTAGACGGTTGCGGTGAGTTTATGGCGGCGGGAGAGGAAGGAACGCTCGACGCATTAAAATGCGCCGCGTGCAACTGTCATCGCAATTTCCATCGCAAGGAAATCGACGGAGAAATGAGCTCGTTCCCGCAGCAAACACTGCCGCAGTCGCACCACCAGTACCACCACCACCAATTCTCGGCTTACTATCGTGCGCCCCCGCCGCCAAGTTCTGGGtacctccaccaccaccatttGACAACTCCACTGATGGGGCAGCACAGGCCGTTAGCTCTACCACCTGCGGCATCGGGAGGGGGGATAATCAGGGAGGAGGAAGACATGTCGAATCCGAGTAGCAGCGGTGGCGGTGGCGGTGggagtggaacgaagaaaagaTTTAGATCAAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAATTTGCGGAACGTTTGGGTTGGAGGATTCAGAAGCATGACGAAGCAGCCGTGGAGCAGTTCTGTGCGGAGACCGGTGTGAAGAGACAAGTGCTCAAGGTTTGGATGCACAATAACAAACACACACTTGGTAAGAAACCCTA 803 0.5205 MEREDMEFDEHEDQEEEEMGIPVPPPGYDSLANSGRSKMGASDGEGAPSTVTAGRKGGSTGMIRYRECQKNHAVSIGGHALDGCGEFMAAGEEGTLDALKCAACNCHRNFHRKEIDGEMSSFPQQTLPQSHHQYHHHQFSAYYRAPPPPSSGYLHHHHLTTPLMGQHRPLALPPAASGGGIIREEEDMSNPSSSGGGGGGSGTKKRFRSKFTQEQKEKMLEFAERLGWRIQKHDEAAVEQFCAETGVKRQVLKVWMHNNKHTLGKKP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02266 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 266 - -
Bva12g02266 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 54 266 - -
Bva12g02266 267 MobiDBLite consensus disorder prediction 1 19 - -
Bva12g02266 267 SUPERFAMILY Homeodomain-like 191 265 IPR009057 -
Bva12g02266 267 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Bva12g02266 267 MobiDBLite consensus disorder prediction 1 58 - -
Bva12g02266 267 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Bva12g02266 267 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 204 260 IPR006455 -
Bva12g02266 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Bva12g02266 267 Gene3D - 189 264 - -
Bva12g02266 267 MobiDBLite consensus disorder prediction 174 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02266 Bva-Chr12 17289783 17290931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02266 12 263 ZF-HD Transcription Factor Family AT4G24660 55.294 1.28e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva12g02266 ZF-HD_dimer 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02266 - - gmx:100794438 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02266 12 17289783 17290931 Bva06g02663 06 16881660 16885353 BWGD
Bva12g02266 12 17289783 17290931 Bva12g02266 12 17289783 17290931 ECH