Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02251 ATGACCATCCTGAATGATAGTCGTGCATCGACGATTCTCAGGTTCGGTCTCTGGAGTTTGGATGAAGGTCTCGTCTGGTTTATTATGTTTGTTCTTCTCGTGCAGACATCATCGCCTGCCACCGCACAGCTTCCAAATACCCTGTCGCCCCCGCCACCGGACCCGTTTTCAAggcttaaatttgataaatccATGGCCATCATTATGGTGGTCCTGGTAGTTGTCTTCTTCGTCTTGGGATTCCTTTCCGTCTACACTCGCCAATGTGCCGAGAGACGAATCCGAGGAAGACTTGACCTTACCATCCCAATCGGTGGTAGCGCACGACGATCCCGTAGGGCAGCGCGTGGTCTTGACCCGGAGGTCATCGATGCCTTCCCCACATTCGTCTACTCCACCGTAAAGGGGCTCAAGATCGGGAGAGGTACCCTAGAATGCGCCGTGTGCTTAAATGAGTTCCAAGACGATGAGACTCTGCGTTTAATCCCAAAATGCAACCATGTCTTCCATCCCGATTGTATAGACATTTGGTTGTCGTCTCACTCCACTTGCCCTGTTTGCCGGGCCAACCTGGTTCCCAAACCAGGGGACCTCTCGTTTGTGGCGATTCAGATTCCAGATCATAGTCCCGAAGCCGACCGAGTAAGACCCGATTCCGAATTAGGACAGGAAAATACGGATACAATTGAGGCCGGTGACATTGAGAACAGAGAAGGTGAGTCACCCAAGGTGAATTTCCTTGACAGGAGTCAAACAGTGAATCACAACCAGAATGGGAACCGGCCACCTAGGTCGAGGTCAACAGGGTTTTTTTTGGGCAACTTGTTTCCACGGTCTCACTCGACGGGTCACTCGCTGGTTCAACCCGGCGAAAACTGCGAAAGATATACGCTAAGGTTGCCGGAGGAGGTAAGGAATCGGTTGCTGAACTCAACCTTGAACCGTACAAAGAGTTGCGTAACCTTTACTAGAGTGAGCAGCGAGAGGAGAGGTTACAGGACTAGAAGTTTGGGCAGCGGGCACGGCAGGAACTATTTGCAGTACGACCTGCTCGGTAGTGAGAGGCGGTCGGAGGGATGGGGATTCACTTTGACGCCGCCGTTTTTTGCTAGAAGCAGTTCGACTGCGTCAGTGAAGTTCTCAACGGGGTCTAACAAACCACCGTTTGATCATTCAGGAGTGACAATGGACAATGACGGGGAGCGATCCTCTGATCGGTTATTTCCAGGCTCATCAAAATG 1241 0.5093 MTILNDSRASTILRFGLWSLDEGLVWFIMFVLLVQTSSPATAQLPNTLSPPPPDPFSRLKFDKSMAIIMVVLVVVFFVLGFLSVYTRQCAERRIRGRLDLTIPIGGSARRSRRAARGLDPEVIDAFPTFVYSTVKGLKIGRGTLECAVCLNEFQDDETLRLIPKCNHVFHPDCIDIWLSSHSTCPVCRANLVPKPGDLSFVAIQIPDHSPEADRVRPDSELGQENTDTIEAGDIENREGESPKVNFLDRSQTVNHNQNGNRPPRSRSTGFFLGNLFPRSHSTGHSLVQPGENCERYTLRLPEEVRNRLLNSTLNRTKSCVTFTRVSSERRGYRTRSLGSGHGRNYLQYDLLGSERRSEGWGFTLTPPFFARSSSTASVKFSTGSNKPPFDHSGVTMDNDGERSSDRLFPGSSK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02251 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 193 IPR013083 -
Bva12g02251 413 SMART ring_2 146 187 IPR001841 -
Bva12g02251 413 CDD RING-H2_EL5_like 145 188 - -
Bva12g02251 413 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Bva12g02251 413 Pfam Ring finger domain 145 188 IPR001841 -
Bva12g02251 413 MobiDBLite consensus disorder prediction 245 273 - -
Bva12g02251 413 MobiDBLite consensus disorder prediction 230 244 - -
Bva12g02251 413 PANTHER RING FINGER DOMAIN-CONTAINING 26 327 - -
Bva12g02251 413 MobiDBLite consensus disorder prediction 209 273 - -
Bva12g02251 413 PANTHER RING-H2 FINGER PROTEIN ATL11 26 327 - -
Bva12g02251 413 MobiDBLite consensus disorder prediction 375 391 - -
Bva12g02251 413 SUPERFAMILY RING/U-box 140 196 - -
Bva12g02251 413 MobiDBLite consensus disorder prediction 209 223 - -
Bva12g02251 413 MobiDBLite consensus disorder prediction 375 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02251 Bva-Chr12 17225366 17226990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02251 28 384 Rapid Response to Elicitors AT3G05200 40.548 8.38e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02251 K10664 - jre:108987460 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02251 12 17225366 17226990 Bva06g02684 06 16957423 16958664 BWGD
Bva12g02251 12 17225366 17226990 Bva12g02251 12 17225366 17226990 ECH