Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02250 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTTACTAATTATGGTTGCAAGGATTTGTACTCTTTGTTAGCAGCAGGAGGAGGACCTGCTAGTGGTGGTGCTGCTTGGATTCATGACTATGGCAGTCTACAagtagaagaagagaaagccCTTGTTGGAATCATCAACGGTAACACGGAGCAGAATCTGCATGCAAGCTGGGattcctcttcttctccttctccttctgtATTGCAAAATGTTAAGGATCAATGGGACTCGCACTCTTCCTCTGATCAATTTCTTCCCGGATCAGCTTTGTTCCCTCCTTCTGTGGAAGCCACTGGAGGGACCGCGGCGACGACAACAACAACAGGTCGGCGCAAACGACGTCGCACCAAAAGCGTCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTCGAGCGCAATCGGCGTAAACAGATGAATGAATACCTGGCAGTGCTCCGATCCTTGATGCCTCCTTCTTATGTCCAAAGGGGTGACCAAGCGTCTATAATTGGAGGCGCCATTAACTTCGTTAAGGAACTAGAACAGCTTTTACAGTCCATCGaggttcaaaagaaaataaagcaacAGCAAGAACCGCAAGAGAGTGCCTTTAATTCCTCACCCTTTGCTGAGTTCTTCACATTCCCACAATACACAAGGCACTGCAACACTTGCTCCTCCGCCGCCGGACCCACCAACAACATGGCACAGAACCAGTGGGCCGTCGCTGACATAGAAGTCACCGTGGTGGACAGCCATGCCAACCTCAAGATACTATCGAAGAAACGATCGGGTCAGCTTATGAAGATGGTTGTTGGCCTTCAGTCTCTTATGCTAACCATTCTCCATCTTAATGTTACCACTGTCGACCAAATGGTCCTTTACTCGGTCAGTGTAAAGGTCGAAGAAGGGTGTCAGCTGAATACAGTGGATGAAATCGCAGCTGCTGTGAATCAACTGCTACGCAGAATTGAAGAGGAAGCTGCTTTTAGCTG 1025 0.4576 MALEAVVFPQDPFTNYGCKDLYSLLAAGGGPASGGAAWIHDYGSLQVEEEKALVGIINGNTEQNLHASWDSSSSPSPSVLQNVKDQWDSHSSSDQFLPGSALFPPSVEATGGTAATTTTTGRRKRRRTKSVKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSIEVQKKIKQQQEPQESAFNSSPFAEFFTFPQYTRHCNTCSSAAGPTNNMAQNQWAVADIEVTVVDSHANLKILSKKRSGQLMKMVVGLQSLMLTILHLNVTTVDQMVLYSVSVKVEEGCQLNTVDEIAAAVNQLLRRIEEEAAFS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02250 341 Gene3D - 129 208 IPR036638 GO:0046983
Bva12g02250 341 SMART finulus 145 196 IPR011598 GO:0046983
Bva12g02250 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 207 IPR036638 GO:0046983
Bva12g02250 341 MobiDBLite consensus disorder prediction 67 99 - -
Bva12g02250 341 CDD bHLH_AtFAMA_like 142 209 - -
Bva12g02250 341 PANTHER MAX DIMERIZATION, MAD 1 339 - -
Bva12g02250 341 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 339 - -
Bva12g02250 341 Coils Coil 187 207 - -
Bva12g02250 341 MobiDBLite consensus disorder prediction 67 132 - -
Bva12g02250 341 Pfam Helix-loop-helix DNA-binding domain 140 191 IPR011598 GO:0046983
Bva12g02250 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02250 Bva-Chr12 17209874 17212146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02250 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.296 2.55e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g02250 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02250 - - gmx:100803240 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02250 12 17209874 17212146 Bva06g02686 06 16968866 16970931 BWGD
Bva12g02250 12 17209874 17212146 Bva12g02250 12 17209874 17212146 ECH