Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02249 ATGGCCATGAAACACAGAAAACTCTTCCCTGCATTAACTAGAACCAACCAAACCCAAGATTGTTCTGGTTTTTGTGACCCAGCATGCCCTTACAACTGCTACTCTTTCCCAGAGTACTACTTTTCCCCACCTCCTCCATCGCCGCCCATATCCGCTGCAGACAATTTAAGCCAAGTTAACAATATCACCCCCTTCTTGATCATCCTTGTCACTTTATTCATAatcatttttgttgttatgATTTTCTACGTGATCAAAGCTAAGTGCTGTGGGTGGAGAGGAATTGGATCAGCTCCCTCCCAATCAGAAAGCTTTGACGAGGATTTTCTGGATGGGAACCAAGTTGATCACCCCATCTGGTTAATCACCACCGTTGGTTTACAGCAGTCAATCATAAATTCCATTACAGTTTTTAAGTATAGAAAAAGTGAAGGATTGATTGAAGGAACCGAGTGTTCAGTGTGTTTGAACGAGTTCCATGAAGGTGAAGCCTTGAGACTCTTACCAAAGTGCAACCATGCATTTCATATCCCCTGTATTGATACTTGGTTGAGGTCTCATACCAATTGCCCACTTTGCCGTGCCGGTGTTGTCTCTACCAATGTCAGTTCTGAAGGCGCCATGCCCACTTTGCCTTCAACGGAGTTGAGAAGAAATCAGGAGACCCAGATGGGGAATTTGCCAAATGATGCTGAATTAAGCAACAACATACAACTTCACAGGCTCTCAGAAGACAGGGATAGGAATGGAACGAGGGAAGCCCAAGAGTTCATTGAGGATGCAATTTCAAAGGAGAGACGTACAACTGTTGATGGAAATCACTTTTCCCACCAACTAAATGATGAGATTCAAACAGTGACAAGGTCTGTTTCAATAGGTTCTGCTTTGGCCCATAGTAGTTGTCCTGGTCCAGGCCTGGCAAATTCATGTCCTAATGATGCTGAAACTCATCCTCAACCAGTTAATCATATGCAAGATGATTCGGAGCAAAACCCAGTTAATCTTGTGAAGCAAGACGGCCAATACCCAACAGCAACAATGCGTAAACCAATTCATCGTTCCTCAATTGAACAATGTTTGCACATAAGCCCAGTTTCCATGAAAAGGTCATTCTCCTGCGGTGGAAGGATTGTATCAACAAAAGGCTACAAGAATCTAAATACAATTCTTCCTTATTA 1178 0.4261 MAMKHRKLFPALTRTNQTQDCSGFCDPACPYNCYSFPEYYFSPPPPSPPISAADNLSQVNNITPFLIILVTLFIIIFVVMIFYVIKAKCCGWRGIGSAPSQSESFDEDFLDGNQVDHPIWLITTVGLQQSIINSITVFKYRKSEGLIEGTECSVCLNEFHEGEALRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGVVSTNVSSEGAMPTLPSTELRRNQETQMGNLPNDAELSNNIQLHRLSEDRDRNGTREAQEFIEDAISKERRTTVDGNHFSHQLNDEIQTVTRSVSIGSALAHSSCPGPGLANSCPNDAETHPQPVNHMQDDSEQNPVNLVKQDGQYPTATMRKPIHRSSIEQCLHISPVSMKRSFSCGGRIVSTKGYKNLNTILPY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02249 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Bva12g02249 392 MobiDBLite consensus disorder prediction 312 334 - -
Bva12g02249 392 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 383 IPR044675 -
Bva12g02249 392 Pfam Ring finger domain 151 194 IPR001841 -
Bva12g02249 392 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Bva12g02249 392 SUPERFAMILY RING/U-box 142 199 - -
Bva12g02249 392 SMART ring_2 152 193 IPR001841 -
Bva12g02249 392 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 383 - -
Bva12g02249 392 MobiDBLite consensus disorder prediction 308 334 - -
Bva12g02249 392 CDD RING-H2_PA-TM-RING 151 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02249 Bva-Chr12 17204291 17205878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02249 4 204 C3H Transcription Factor Family AT1G72220 48.684 3.92e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02249 - - aprc:113847030 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02249 12 17204291 17205878 Bva12g02249 12 17204291 17205878 ECH