Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02245 ATGGCAGTACTTGGTCGCCTCTGCTTTTCTTCTGCAACATACCTCTCTACGGAAAGCCCTCTCTTATCTCTGAATTCTCGAAATCAATCTAACTTTGCCATCCACAATCTCTGTTTTTGCGGGTCACCTTCTTCGTTTCAGTTTCTAAGTCTCTCCCTTGCGCATAGCCCCAACTTTAGGAATACAGAAACCCGTAACTTTGTACTCAAATTTACCTCTACCTCACCGGAACAAGTGCTTGATTCTTCCCCTGCAAATGTTTCTGCTGAGACGGAGGCAGAAACTGAAGAATTTTCTAAAACCAGGTTGCTTGCTTCCAACGTACCTTGGAGTAGTACTCCTGAAGACATTCGTTCCCTGTTCGAGAGGCATGGAAAAGTCGTAGACGTTGagcTTTCTATGTATAACAAGACCAGAAACAGGGGTTTGGCGTTTATCGAAATGGGATCGCCAGAAGAGGCTCTTGCAGCTCTCAATAATCTCGAATCGTATGAGTACGAGGGTCGCACAATAAAAGTCGATTATGCTCGgcccaaaaagaagaaaactccaCCTCCAGTGCAACCGAAGCCAGTAACATTTAACTTGTTTGTTGCAAATTTGTCCTTTGAAGCGAGGGCAAAACATCTCAAGGAGTTTTTCGAGTCAGGAAGTAGTGGTGTTGTTTCTGCGGAGGCTATATTTCATGATAACCCTAGAAAGTCATCTGGCTATGGATTTGTATCCTTCAAGTCCAAGAAAGAAGCTGACGCAGCTCTTTCTGAATTCCAAGGGAAGATCTTTATGGGAAGGCCACTGAGGGTGGCACGTAGTCGGCAATTTGTTAAACAACCAGTAGAGGGGAACGTAGGCTCTGAAGATGCATCACCTGAGCTGAATGGGAATGGGGAAATAGCCAATGATGCTGCTTG 911 0.438 MAVLGRLCFSSATYLSTESPLLSLNSRNQSNFAIHNLCFCGSPSSFQFLSLSLAHSPNFRNTETRNFVLKFTSTSPEQVLDSSPANVSAETEAETEEFSKTRLLASNVPWSSTPEDIRSLFERHGKVVDVELSMYNKTRNRGLAFIEMGSPEEALAALNNLESYEYEGRTIKVDYARPKKKKTPPPVQPKPVTFNLFVANLSFEARAKHLKEFFESGSSGVVSAEAIFHDNPRKSSGYGFVSFKSKKEADAALSEFQGKIFMGRPLRVARSRQFVKQPVEGNVGSEDASPELNGNGEIANDAA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02245 303 SUPERFAMILY RNA-binding domain, RBD 101 270 IPR035979 GO:0003676
Bva12g02245 303 CDD RRM_SF 103 174 - -
Bva12g02245 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Bva12g02245 303 Gene3D - 70 182 IPR012677 -
Bva12g02245 303 Gene3D - 183 277 IPR012677 -
Bva12g02245 303 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 16 300 - -
Bva12g02245 303 SMART rrm1_1 102 174 IPR000504 GO:0003723
Bva12g02245 303 SMART rrm1_1 195 269 IPR000504 GO:0003723
Bva12g02245 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Bva12g02245 303 CDD RRM_SF 196 268 - -
Bva12g02245 303 PANTHER OS08G0483200 PROTEIN 16 300 - -
Bva12g02245 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 172 IPR000504 GO:0003723
Bva12g02245 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 267 IPR000504 GO:0003723
Bva12g02245 303 MobiDBLite consensus disorder prediction 279 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02245 Bva-Chr12 17185336 17187495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02245 103 273 Eukaryotic Initiation Factors Gene Family AT2G36660 26.316 8.95e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02245 - - csv:101208444 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02245 12 17185336 17187495 Bva12g02245 12 17185336 17187495 ECH