Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02231 ATGGATAATTCTCTATTGGAGGAGACGGAAGCACCCAGAGATCGCAGAGCAGACGCTCTTGGAGACCTTCGAGTCCTTCCCGATGAAATCCTCTGCGGTATTTTTGAACTTCTCTCTCCTCGAGACGTTGCTCGCCTCGCTTGTGTAAGCAGTGTGATGTACATTTTATGCAATGAAGAACCACTTTGGATGAGTCTTTGCCTCAAAGGAGTTTCTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTATTCTGCATAGTGAGAATTTGGAAGATAACTGCAAAGAGAACCAGAgaaaaagttttcattttgatgGATTCaactcattatttttatacagaAGATTATACAGGTGCCATACCTCTTTGGATGGATTTTAtgcagatgatggaaatgtggaaagaagaaaaaacttatCCTTGAAAGATTTCAATGATGAATATGACAGCAAGAAACCGGTTATTCTTACTGGATTGGCTGATATGTGGCCTGCGAGGAGTAAATGGACAACTGATCGGTTGTTGCAAAGCTATGGTGATGTAGCTTTTAAGATTTCTCAAAGTAGTTCCCGgaagattaaaatgaagcttAAGGATTATGCCTCTTACATGAAACTTCAGCATGATGAAGATcccttatatatttttgatgaaAAGTTTGGTGAAGCTGCACCCAGCTTGTTGAAGGATTATTCCGTTCCTCATTTGTTTCAAGAAGACTATTTTGATGTCTTAGATACTGATAAGCGGCCATCCTATAGGTGGCTTATAATTGGGCCTGAGAGATCTGGAGCATCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCgtaaaagGTGGGCACTTTATCCTCCAGGAAAGGTGCCTTTGGGTGTTACAGTTCATGTTAATGAAGAAGATGGTGATGTCAACATTGATACCCCATCATCACTTCAGTGGTGGCTAGACTTTTATCCACTTCTCGCTGATGAAAACAAGCCAGTTGAGTGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTTTAAATTTGGAAACAACTATTGCTGTCACACAGAATTTTGTAAATTCTAATAACTTTGAATTTGTGTGTTTGGATATGGCACCTGGTTATCATCACAAGGGAGTTTGTCGTGCTGGACTGCTTGCCCTTGACGAAGAAAGTTATGAGAATgcaaaagagaatatattatGTAATGAAAATAACTTACGTAACTCAGATTTGTCAAGGAAAGAGAAGAGGCCGAGAACTCATAAAAATAGAgatgatttaaaatatgaaagaaacataaatgGTCCATCCAGAATGTATAATTTATGGAAAAATGGATTTTCTTATGACATAAGTTTCTTATCCATGTTTTTGGATAAAGATAGAGACCACTACAGTTCCCCTTGGAGCTCAGGCAACTGCATTGGACAACGGGAACTAAGAGAATGGTTATCCAAGCTATGGATTGGAAAACCTGGAATGAGAGAGCTAATATGGAAGGGGGCATGTCTTGCACTAAATGCTGACAGTTGGTTAGAAAGCCTGACAAAAATTTGCGCCTTTAACAATCTTCCCTGTCCTAGTAATGATGAATGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTTGTGGGGAATTCTGTTGTTAAGATTTTTGTTGAAGGAGGGCTGGGAGCTTCACTTTACGGTTTAGGCACAGAGTTGGAGTTTTATAGCCTACTGCATGATGTCAACTCCCCTATTAGGAATCACATTCCTAATATTTTGGCTAGTGGTATTCTTTATCTTGAAGATGGGTGTTATACCCATGTGCCTTGGGATGGAAAAGGAGTTCCTGATGTGATTTCCAAGAATGATCTCATTGGGCAGAAATGTGGAGTTGATGGTTTCTCATTCGGTGTGTGGGCCAAGAAGCTGTCTGAGTATAGAAGTGCTGGGATGCTTATGGATGGATCAGATAATTCAGCCATTCACTCAAGCATATGGCCATATATCATAACGAAACGATGCAAAGGGAAAATTTTTGCAGAGTTAAGAGACATTCTATCATCAGAAGATACAACAAACCTAGCTACTTTCTTAGGAGAGCAGCTGCGCCAGATTCATCTTTTGCCACATCCACCTCTggatttttcatctttctctgACATTGAACAGAAATCAGGTTTGCCTGAGACTAATGGTTGCTTAGAATGTATTCCCTATAAATCAAACATCCTAGCAGAATGGGAAATCTTCATCAAAACCTTAATGAGGAAGAGGAAGGATGTCTCAAGTCGTTTGACTAAGTgGGGAGAGCCGATCCCTAGCAAGCTGATAGATAAAGTTGATGAATATATCCCGCATGATTTTGGAAAGCTACTAAACATAGCTGAGAATTCCCAAAGTCATAAACTCTGCTCTTGGATACACAATGACATTATGGATGATAACATTTACATGGAGCCATTGTGCGTTAGTTCATGCACTAGTGGAAATACTGAAGATGCTGGCATTGTGGACAATGGTTTCTCGATTGGCCATGATGAAGATAGAAATGGAAAATCTTGGTGTCCTAGCCACATTCTTGATTTCTCTGATCTTTCAATAGGTGATCCTATATTTGACTTGATACCCATTTTTCTAGATGTGTTTAGAGGTGATTCTCATCTCCTTTGGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCAAGTAAATTATCAACGCAGGAGTCTGCAGAGGATGATAAGTTTGGACGACTTTCATATCGTGCCATGTGCTATTGTATTTTGCATGATGAGAATGTTTTGGGAGCTATTTTTAGTATGTGGAGCGAACTTAGATCAGCGACGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAATAATTACCAAGGCTTCCCTTG 2933 0.3825 MDNSLLEETEAPRDRRADALGDLRVLPDEILCGIFELLSPRDVARLACVSSVMYILCNEEPLWMSLCLKGVSGLLQYKGSWKKTILHSENLEDNCKENQRKSFHFDGFNSLFLYRRLYRCHTSLDGFYADDGNVERRKNLSLKDFNDEYDSKKPVILTGLADMWPARSKWTTDRLLQSYGDVAFKISQSSSRKIKMKLKDYASYMKLQHDEDPLYIFDEKFGEAAPSLLKDYSVPHLFQEDYFDVLDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIDTPSSLQWWLDFYPLLADENKPVECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRAGLLALDEESYENAKENILCNENNLRNSDLSRKEKRPRTHKNRDDLKYERNINGPSRMYNLWKNGFSYDISFLSMFLDKDRDHYSSPWSSGNCIGQRELREWLSKLWIGKPGMRELIWKGACLALNADSWLESLTKICAFNNLPCPSNDEWLPVGTGSNPVYLVGNSVVKIFVEGGLGASLYGLGTELEFYSLLHDVNSPIRNHIPNILASGILYLEDGCYTHVPWDGKGVPDVISKNDLIGQKCGVDGFSFGVWAKKLSEYRSAGMLMDGSDNSAIHSSIWPYIITKRCKGKIFAELRDILSSEDTTNLATFLGEQLRQIHLLPHPPLDFSSFSDIEQKSGLPETNGCLECIPYKSNILAEWEIFIKTLMRKRKDVSSRLTKWGEPIPSKLIDKVDEYIPHDFGKLLNIAENSQSHKLCSWIHNDIMDDNIYMEPLCVSSCTSGNTEDAGIVDNGFSIGHDEDRNGKSWCPSHILDFSDLSIGDPIFDLIPIFLDVFRGDSHLLWRFLESYKLPFASKLSTQESAEDDKFGRLSYRAMCYCILHDENVLGAIFSMWSELRSATSWEEVELTVWGELNNYQGFP 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02231 977 Pfam F-box-like 25 69 IPR001810 GO:0005515
Bva12g02231 977 Pfam Cupin-like domain 151 373 IPR041667 -
Bva12g02231 977 SUPERFAMILY Clavaminate synthase-like 130 378 - -
Bva12g02231 977 SUPERFAMILY F-box domain 14 73 IPR036047 GO:0005515
Bva12g02231 977 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 911 - -
Bva12g02231 977 SMART cupin_9 223 381 IPR003347 -
Bva12g02231 977 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 6 911 - -
Bva12g02231 977 Gene3D - 14 97 - -
Bva12g02231 977 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Bva12g02231 977 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Bva12g02231 977 Gene3D Cupin 119 371 - -
Bva12g02231 977 SUPERFAMILY Protein kinase-like (PK-like) 675 908 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02231 Bva-Chr12 17113393 17121198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02231 9 973 Glycosyltransferase AT1G78280 61.798 0.0 1208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva12g02231 Cupin_8 3.6e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02231 - - gmx:100792541 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02231 12 17113393 17121198 Bva12g02231 12 17113393 17121198 ECH