Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02223 ATGGCTTATCCACATTACCGATCACAGTTCGGCGACACAACTTTTACCAAAGTTTTTGTTGGAGGACTTGCTTGGGAGACACCCACTGAAGAAATGCGTAAATACTTCGAGCAGTTCGGAGATATTCTTGAGGCTGTCATCATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACTTTCCGTGATCCAGAATCAGCAAGAAGAGCCTGTGCTGATCCAAACCCAGTAATAGATGGAAGACGAACAAATTGTAATGTTGCTGCTCTGGGAAGGCCTCGACCTTCTCCACCCCGAGGAAGAAATGCATTTCAAGCTGGTGGGAGTAGCAGCTATAGAGGAGGCACAGCACAGGGTGCTGTGTCATATGGTGGTACTCCGGCAGCAGCACCTCCGCCATTGCCACCGGCACCACCTTTGATGTACCCAAGTTATAGCTACCCAACCTACGGTCCTGATTATGGGTACCATCAACAGGCCCCATTGTACAACCCCCAGATGCAGCAGCAGGCACAAATCTATCATCAACAAGTTTATGGACCATCTTCTCCTACGATGGGATCACCATATTACTATGGTTATTCAGTACAAGCAACAAGGGGTACATTTTCTACACCCCAACCACATCGCCTACCAGCTGGACCCTCTTATCTATACTACCCTACTGCACCCATGGAAGGCTCTTTCTCTGCTTATCGTCCGCCTCAACCACCAACACTAAGCCATCCCTTTCCCTCCCCTACTGCTGCTGCTACTGATTCACAGCCTCAGCAGCGTACCTCCTCAGAAACAGCAGCTGGAGTAGTTGTAACTTCAGAAAGTCCAAATACTCAAGGGAAgaacta 854 0.4813 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRTNCNVAALGRPRPSPPRGRNAFQAGGSSSYRGGTAQGAVSYGGTPAAAPPPLPPAPPLMYPSYSYPTYGPDYGYHQAPLYNPQMQQQAQIYHQQVYGPSSPTMGSPYYYGYSVQATRGTFSTPQPHRLPAGPSYLYYPTAPMEGSFSAYRPPQPPTLSHPFPSPTAAATDSQPQQRTSSETAAGVVVTSESPNTQGKN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02223 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Bva12g02223 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Bva12g02223 283 PANTHER - 1 273 - -
Bva12g02223 283 MobiDBLite consensus disorder prediction 94 131 - -
Bva12g02223 283 MobiDBLite consensus disorder prediction 230 283 - -
Bva12g02223 283 MobiDBLite consensus disorder prediction 106 120 - -
Bva12g02223 283 Gene3D - 7 129 IPR012677 -
Bva12g02223 283 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bva12g02223 283 PANTHER GEO13361P1-RELATED 1 273 - -
Bva12g02223 283 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Bva12g02223 283 MobiDBLite consensus disorder prediction 247 283 - -
Bva12g02223 283 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02223 Bva-Chr12 17077133 17080685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02223 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.40e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02223 12 17077133 17080685 Bva06g02712 06 17068393 17072189 BWGD
Bva12g02223 12 17077133 17080685 Bva12g02223 12 17077133 17080685 ECH