Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02212 ATGGGAAGGTCCCCTTGCTGTGACGAGAATGGCCTTAAGAAAGGGCCCTGGACTCCTGAGGAAGACCAAAAGCTTGTCCAGTACATTCAGAAAAATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTAGCAGGCCTTAACAGATGTGGAAAAAGCTGCAGGCTAAGGTGGACAAATTATTTAAGGCCTGATATCAAGAGAGGCAAATTTTCTCAAGAAGAGGAGCAAACAATTCTTCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATCGCGTCTCACCTTCCCGGAAGGACAGACAATGAGATCAAGAATTTTTGGAATACCCATTTAAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACACACCAGCCAAGAACTGACCTTGTTTCAAGCTTGCCTTATCTGCTAGCATTGGCCGACATGACAGAACTTATAGATTATCAGTCATTGGATGAACAGGCAGTGATGAGGTTACAAGCAGAGTCTGCTCAGTTGGCCAAGCTTCATTACCTTCAATATTTACTCCAATACTCCACATCTTCCTTATCTACCAACTCCTATGACCAAACTGCTATCACAAACATGGAAGGTTTCAGTTTATTGAATTCAATCTCAAATATCAAAGAGAACTCAGTTATGAACTTCCAGCTGCCACCTCAAGTGGATAATCCTGCAGCAGCCTCATTTTCTCATGGGATTGCTAGCTCCCAACCACTCCACCACCCAAGCTCAATATTACCTCACTTTTCAGACCCACAAGTCCCTTTCAGTTCCCAAATATGTTTGAATAGCGAGACAGGTCAAGGTACTAACTTTACAATGTTAAGTCAAGGGGATCACACAGCTAATGATGATTCTTCATGGGTTATCCCACCTCTTGTATCTCCTTCTAGACCCCCAACTGTGACAGGGACCTCAACAAGCAACCCTGGAGATGCCAGCAGCACCACTTCTAGCCATGGAGGAGGAGCTCCATCCTACTGGCCTGACTTCTTTTTCGAAGACCCTATTATGCACGAGATTtctta 1040 0.4433 MGRSPCCDENGLKKGPWTPEEDQKLVQYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALADMTELIDYQSLDEQAVMRLQAESAQLAKLHYLQYLLQYSTSSLSTNSYDQTAITNMEGFSLLNSISNIKENSVMNFQLPPQVDNPAAASFSHGIASSQPLHHPSSILPHFSDPQVPFSSQICLNSETGQGTNFTMLSQGDHTANDDSSWVIPPLVSPSRPPTVTGTSTSNPGDASSTTSSHGGGAPSYWPDFFFEDPIMHEIS 346
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02212 346 CDD SANT 69 112 IPR001005 -
Bva12g02212 346 SMART sant 66 114 IPR001005 -
Bva12g02212 346 SMART sant 13 63 IPR001005 -
Bva12g02212 346 MobiDBLite consensus disorder prediction 276 294 - -
Bva12g02212 346 MobiDBLite consensus disorder prediction 276 326 - -
Bva12g02212 346 CDD SANT 16 61 IPR001005 -
Bva12g02212 346 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 345 - -
Bva12g02212 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva12g02212 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva12g02212 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva12g02212 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva12g02212 346 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva12g02212 346 Gene3D - 13 66 - -
Bva12g02212 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 345 - -
Bva12g02212 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva12g02212 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva12g02212 346 Gene3D - 69 116 - -
Bva12g02212 346 MobiDBLite consensus disorder prediction 303 326 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva12g02212 Bva-Chr12 17014184 17015705 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02212 1 346 MYB Transcription Factor Family AT1G34670 54.865 6.85e-122 353
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02212 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02212 K09422 - gmx:100811162 516.538
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02212 12 17014184 17015705 Bva12g02212 12 17014184 17015705 ECH