Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02202 ATGTCGCACTTCGGTAGATCTGGCCCTCCAGACATCAGAGACACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGTACCACCGCAGACGATCTCCATCCACTCTTTGACAAGTACGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGgaCCGGTGAATCTCGCGGTTTTGCTTTTGTTCGTTATAAGTACGCAGACGAGGCTCAGAAGGCGGTGGATAAGCTTGatgGAAGAGTCGTTGATGGCAGAGAAATTATGGTTCAATTTGCAAAATACGGACCTAATGCAGAACGAATtCACAAGGGCAAAATAATggaaacatcatcaaagccgAGAGGGAGGTCAAGAAGCCGCAGCCCTCGTCCTAGAAATAGGGATGAATATAGAGACAGAGACTACAGGAGGAGAAGTCGCAGTCGGAGTAGGGAGAGATATGATCGTGACAGATACcgtgaaagagagaaagatcaTCATCGTAGAAGCAGGAGCCGTAGTGCAAGTCCTGATCGTCGCAGGGATCGTGGGAGAGACAGATATGATGAGGAGCATCGTACTAGGAGCAGATCTTATGATAATGCATCCCCGGCTCGGCGTGAACCCAGTCCTCATAGGAGTCCATCTCCACAGAAGAGGGTTTCTCAGGGTGGACAGCATGGTGAACAAAATAGCAATGGGCAATCACCTGCTCAAAAGGATGTTTCACCACGTGACCGACCTGTAGATTCTCGAAGCCCATCTCCACACAGATCTGATGCTGATGAATG 770 0.4701 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLHPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETSSKPRGRSRSRSPRPRNRDEYRDRDYRRRSRSRSRERYDRDRYREREKDHHRRSRSRSASPDRRRDRGRDRYDEEHRTRSRSYDNASPARREPSPHRSPSPQKRVSQGGQHGEQNSNGQSPAQKDVSPRDRPVDSRSPSPHRSDADE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02202 256 Gene3D - 5 105 IPR012677 -
Bva12g02202 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE 1 255 - -
Bva12g02202 256 MobiDBLite consensus disorder prediction 100 256 - -
Bva12g02202 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Bva12g02202 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 255 - -
Bva12g02202 256 MobiDBLite consensus disorder prediction 100 115 - -
Bva12g02202 256 MobiDBLite consensus disorder prediction 236 256 - -
Bva12g02202 256 MobiDBLite consensus disorder prediction 208 233 - -
Bva12g02202 256 MobiDBLite consensus disorder prediction 122 195 - -
Bva12g02202 256 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Bva12g02202 256 SMART rrm1_1 17 90 IPR000504 GO:0003723
Bva12g02202 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02202 Bva-Chr12 16967660 16971312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02202 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 5.01e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02202 K12891 - zju:107420854 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02202 12 16967660 16971312 Bva12g02202 12 16967660 16971312 ECH