Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02190 ATGGCAGCTACAATGGATTTCTACAGTAGCGGAGCACTTCAACCAGATCCCTTCCGAGGTGAGCTTATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCAATACTCCCTCCCCTTCTCCCTCGGCAGCCTCATCCCCATCTTCAAATTCCTCTCTACCTTCTACTTCCTATTCTCCCTCTTGCAGCTCCAGCTACTTCAATTCCTCTCCTTCTCTCCCAATCCAGCCCACTTTTTATGCAGATGGTTGCTCCACATCGATGACCCATGTATTTTCCGACGGGTTATCCAACAACCAAAACTTTATTGGTTTCGGGCAACCAAGTTCTGTTCTTGGGCTCAATCGCCTAATCCCATCTCAGATTAACCAGATCCAAGCTCAGATCCAGCTCCAGAGCCACCATAACATGCCTTGGAATCAAAACAGCTCCCTTCGCTTCCTGAGTCCCAAACCTATCCCTATGAAGCAGATCGGTACACCTCCAAAACCCACCAAGCTCTACAGAGGAGTCAGACAACGACATTGGGGAAAGTGGGTAGCTGAGATCAGACTCCCAAAGAACCGCACCCGTCTCTGGCTCGGTACCTTCGACACCGCCGAAGAAGCCGCCCTGGCTTACGACAAGGCCGCTTACAAGCTCAGAGGTGACTTCGCTAGGCTCAACTTCCCGAGCCTCCGACACCAAGGTTCCTGTGTTGGGGGCGAATTCGGCGAGTACAAGCCTCTACACTCCTCTGTTGATGCGAAGCTTCAAGCAATTTGTGAAAGCTTGGCCGAAATGCAGAAACAGGGGAAGTCTGACAAGTCTGCGGGCGCAGCTAAGAGGTCTTCAACCGGGCGGTCAAAATTGGGTTCGACGGTGGTCCAGCCAAAGACGGTGACGCATTCCGAGGAGCAGTCGGTGATCGGAGAAGTTGATCCGAAAGGGTCGGAGAACTGTTACAAGGTGGAAGCTTCCTCGTCGTCTGCGGAGAGTGAGGGATCTGGTGATTCTTCACCTTTGTCAGATCTTACTTTTTTGGATGCCAGCGAGCTACAATGGGATGCTACTTCGGATAACCTTAATCTGTACAAGTACCCCTCTTATGAGATTGATTGGGCATCTATATG 1112 0.5072 MAATMDFYSSGALQPDPFRGELMEVLEPFMKSPSNTPSPSPSAASSPSSNSSLPSTSYSPSCSSSYFNSSPSLPIQPTFYADGCSTSMTHVFSDGLSNNQNFIGFGQPSSVLGLNRLIPSQINQIQAQIQLQSHHNMPWNQNSSLRFLSPKPIPMKQIGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPSLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLAEMQKQGKSDKSAGAAKRSSTGRSKLGSTVVQPKTVTHSEEQSVIGEVDPKGSENCYKVEASSSSAESEGSGDSSPLSDLTFLDASELQWDATSDNLNLYKYPSYEIDWASI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02190 370 MobiDBLite consensus disorder prediction 31 54 - -
Bva12g02190 370 CDD AP2 166 224 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 MobiDBLite consensus disorder prediction 25 54 - -
Bva12g02190 370 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 PRINTS Ethylene responsive element binding protein signature 190 206 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 MobiDBLite consensus disorder prediction 271 300 - -
Bva12g02190 370 Gene3D AP2/ERF domain 167 225 IPR036955 GO:0003700|GO:0006355
Bva12g02190 370 SUPERFAMILY DNA-binding domain 167 224 IPR016177 GO:0003677
Bva12g02190 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 370 - -
Bva12g02190 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 370 - -
Bva12g02190 370 Pfam AP2 domain 168 216 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 SMART rav1_2 167 230 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 MobiDBLite consensus disorder prediction 315 336 - -
Bva12g02190 370 ProSiteProfiles AP2/ERF domain profile. 167 224 IPR001471 GO:0003700|GO:0006355
Bva12g02190 370 MobiDBLite consensus disorder prediction 265 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02190 Bva-Chr12 16886597 16888545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02190 1 370 AP2-EREBP Transcription Factor Family AT1G78080 49.612 1.59e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g02190 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02190 K09286 - qsu:112038037 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02190 12 16886597 16888545 Bva06g02742 06 17245660 17247669 BWGD
Bva12g02190 12 16886597 16888545 Bva12g02190 12 16886597 16888545 ECH