Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02175 ATGTCGTCTTCGAGTTCGAATTCGAATTCTCCGTGCGCCGCGTGCAAGCTTCAGAGGCGGAAGTGCACTCAAGAGTGCGTGTTCGCGCCGTATTTCCCGCCGGATAACCCTCAGAAATTTGCCTATGTCCACAAGGTGTTTGGAGCAAGCAACGTGGCGAAGCTTCTCAATGAACTGAACGCCAACCAGCGTGAAGACGCCGTCAAATCTCTCGCATACGAAGCAGAAGCCCGTCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCTGTCCTCCAACAGAGGCTGAAGCAGGTACAGGCTGAACTCACTAGCGCTAGAAGAGAGCTCGCTAACTATATTGGACCCCAGGCCATGCTTCCTATGGTACCTTCTCCGCAAAATCAGCAGCACCCCCGCAACGTTATCCCTTCTGCTTTCCCTTACAACAACGCGCCACCGCAACCCATGATGGGGATCCCCACGCACGGTACCCAAATGATGATACGTGACCCTCAGCAGATTTTGGAGGGTCAGCAGTTAGCTGTGGCTTTAGCGGCAAGAGAGCAAGAGATGACACAGCAGCAACAGCAAGAGCTTTTCAGGTTTAATGGTGGCGGGTATGAAGtggcttctgcttctgctggTGGCTTCAACCACATGTCCACTACTGCTTCGATGTCCCCTTCGTTGGCTCTGGGTCCTGTGGATAACGCTTTCCAAATTCAACCTGACCAAGCAGCTGAACATCAACATCCTTTACATCATCAACTCCAGGCTCAGTTGATTCTCAATCCACAGCAGCCACAAGCACAGCAAACGCCACTACCCCTCAAGTCTGAAAGCGAGGATGGTGGGAGTAGCCGACCTTATCGTTG 860 0.5163 MSSSSSNSNSPCAACKLQRRKCTQECVFAPYFPPDNPQKFAYVHKVFGASNVAKLLNELNANQREDAVKSLAYEAEARLRDPVYGCVGLISVLQQRLKQVQAELTSARRELANYIGPQAMLPMVPSPQNQQHPRNVIPSAFPYNNAPPQPMMGIPTHGTQMMIRDPQQILEGQQLAVALAAREQEMTQQQQQELFRFNGGGYEVASASAGGFNHMSTTASMSPSLALGPVDNAFQIQPDQAAEHQHPLHHQLQAQLILNPQQPQAQQTPLPLKSESEDGGSSRPYR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02175 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 256 - -
Bva12g02175 286 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Bva12g02175 286 Coils Coil 90 110 - -
Bva12g02175 286 MobiDBLite consensus disorder prediction 260 286 - -
Bva12g02175 286 MobiDBLite consensus disorder prediction 260 275 - -
Bva12g02175 286 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Bva12g02175 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 6 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02175 Bva-Chr12 16785528 16786388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02175 6 228 AS2 family AT5G66870 53.469 8.60e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g02175 LOB 5.8e-42 No_clan