Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02161 ATGAGCATATTTGAGACATTCCAGCAGGTTAGCATGTGGGGAGACAGTTTTAAAGTTGAGGACGGCTTAAATTCAAATGCTTCCCCAATATCACTGGTCAATACTAGTAAAGAGAGAAAGCCTGAATATATTCCTCAGGAATCCAAGGGGCCTTCTGGCGATGATCATCAAGACACAAATAAGGCTGTTACTAAGGTGCTAAGACGCCTAGCTCAAAATCGTGAGGCCGCTCGGAAAAGTCGCCTGCGGAAAAAGGCCTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTTATGCAATTGGAGCTGGAGCTTGAGAACGCCAGAAAGCAGGGTGTATATGTAGGCGGTGGATTAGATGCTAGTTATATAGGACCATCTGGAACAATAAACCCAGGGATTGCTGCGTTTGAAATTGAATACGGACACTGGGTTGAAGAGCAACATAGACACAACAAAGAACTTAGAAGTGCATTGCAAACTCAAGCACCTGATATACAGCTTGATCTACTCGTTAAGAGTTACTTGAACCATTACTCGACTCTTTTCAGGATGAAGGCAGATGCTGCAAGGGCTGACGTCTTTTATTTGCTCTCTGGTGTGTGGAAAACATCAGTAGAGCgtatttttctttggattgGAGGGTCCCGCCCATCAGAGCTTCTAAACATCGTGGTGCCACAGCTTCAACCTTTGACTGATGGACAAATTCTTGGTTTTAACAACCTCCGCCAATCGTCTCAGCAAGCCGAAGATGCTCTTTCTCAAGGGCTGGATAAACTGCAGCAGAGTCTGGTCTATAACATAGCTGCTGATCCAATGGATATGGGAAACTTTGGGTTTCAGATGGCTGCTGCAGTGGAGAAAATTGAAGCTGTAGAAGGTTTTGTGAACCAGGCAGATCACCTCAGAGAGCAAACTCTGCAGCAGATGTCTCGCATTCTGACACCCCACCAAGCTGCACGAGGCTTGGTGGCTTTAGGAGAGTACTTTCACCGTCTCCGTGCCCTTAGTTCTCTTTGGGCCGCTCGTCCTTGTGATCCTTCTTA 1049 0.4538 MSIFETFQQVSMWGDSFKVEDGLNSNASPISLVNTSKERKPEYIPQESKGPSGDDHQDTNKAVTKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELELENARKQGVYVGGGLDASYIGPSGTINPGIAAFEIEYGHWVEEQHRHNKELRSALQTQAPDIQLDLLVKSYLNHYSTLFRMKADAARADVFYLLSGVWKTSVERIFLWIGGSRPSELLNIVVPQLQPLTDGQILGFNNLRQSSQQAEDALSQGLDKLQQSLVYNIAADPMDMGNFGFQMAAAVEKIEAVEGFVNQADHLREQTLQQMSRILTPHQAARGLVALGEYFHRLRALSSLWAARPCDPS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02161 349 Gene3D - 64 112 - -
Bva12g02161 349 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Bva12g02161 349 SMART brlzneu 61 121 IPR004827 GO:0003700|GO:0006355
Bva12g02161 349 Pfam Seed dormancy control 152 226 IPR025422 GO:0006351|GO:0043565
Bva12g02161 349 PANTHER TRANSCRIPTION FACTOR TGA9 1 346 - -
Bva12g02161 349 Coils Coil 84 111 - -
Bva12g02161 349 MobiDBLite consensus disorder prediction 40 58 - -
Bva12g02161 349 MobiDBLite consensus disorder prediction 28 58 - -
Bva12g02161 349 Pfam bZIP transcription factor 64 95 IPR004827 GO:0003700|GO:0006355
Bva12g02161 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Bva12g02161 349 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 346 - -
Bva12g02161 349 SUPERFAMILY Leucine zipper domain 65 100 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02161 Bva-Chr12 16715795 16719254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02161 1 349 Calmodulin-binding Proteins AT1G77920 58.127 1.09e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Bva12g02161 DOG1 4.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02161 12 16715795 16719254 Bva06g02766 06 17394356 17399168 BWGD
Bva12g02161 12 16715795 16719254 Bva12g02161 12 16715795 16719254 ECH