Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02155 ATGCCTCCGCAACAGCCACGACAACGCCAACATCCGGCGCCGCCGCAGATTCGCCATCTCGACCCCAAAATCTGGCGGGCTTGTGCTGGCGCCTCCGTTCAAATCCCAACTCTGCATTCTAGGGTTTACTACTTTCCTCAAGGCCATCTAGAGCATGCCTCGTCAGCTCCTCAATACTTGTCTCCTCATGTCCTCGCACGTCCCGTCATTCCCTGTCGCATCACCGCTGTACACTTCCTGGCTGATCCTGTCACCGATGAGGTCTTTGCTAAGCTTCTTCTGCAACCTGTCAGGGAACTCCACCCTCAAGACATCGGCGACTCAGTGGAGTCACCGGACGATGACAAGGTCGTCTCATTTGCTAAGATTCTGACGCCTTCTGATGCCAACAATGGAGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGATTCTATTTTCCCGCCGCTCAACTACCAGGCCGACCCGCCGGTTCAGACATTGTCTGTGACTGACGTTCATGGAGCCATTTGGGAGTTTCGCCACATTTACAGGGGTACGCCTAGGCGACACTTGCTAACTACTGGCTGGAGTAAGTTTGTCAATAACAAGAAGTTGATTGCCGGTGATTCCGTAGTTTTCATGAAGAACAATAGGGGGGAGATGTTCGTCGGGGTTCGCAGAGCTGTTCGATTAACTTCAGGAAATGGTGGTGATTATGCTACGTGGTGCTCCCCGACTGGCGGAGGGAGAAATAAGGTTGAGGAGTTAGAGCAGGAAGAGAACTGCGCTGGTCTAAGAGGAGGACAGGGGTTTTCTAGGAACGGGAGGGGGAAATTGTCCGCGAAGTCAGTTGCAGAGGCAGCAGAATTGGCAGCACAAAATATGCCGTTTGAGGTTGTGTATTATCCAAGAGCAGGGTGGTCGGACTTTGTGGTGAAGGCGGAGGTTGTGGAAGAAGCAATTAGTATCGTTTGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGGACAGTCTCTTCAGCATCTGCCCCTGATAACGGGCCTTGGCGGGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTGGAACATGTTTCCCCCACTCCTCCACTTCATACGTCATTTCCCCCCACAAAAAGGTTTAGAGCTTCTCATGGTTCTGGGGTGCTGGTTGATCGAGAGGGAGACCCCTTCTTTCCTATGACAGGATTCACTAACTCAACAATGGCTTATTTGAATCAAACATTGTTGAATTATGACACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTTTTTTCTGTATCTAGTTTCTCCAACTTTTTGAGTGATAACACTCATATGTGTAATGGTAATTCCTTCGGGAACAACACAGTGCCAAAGTTGAAAACTGTGTCCACAGAGCTGAACATTGGCAGTTCTCAGTCTGACAACTTGTCACTTGATAGCCCGAGTAGTTTGCATTCTATTAGCGCAGAATTTGTTGGGACCCAGAGCGGCAACTCAACAAAACTTGGTGCTGGTTCATTTCAGCTGTTTGGTAAGATCATTCAGACGGAACAGCCTGCTGAAATTGGTCTGCAGAGTGCTGGTTGCACAGGAGGCTTGATGTCCCATGCCCCAGTGCCTCAGCAGTTGAAGCATTTGTACTCTGGCAGGCAGGAAGCTGACTACTCTTTTGATCTTGCAGTTAGTAATATCAAATCAAAGGCCAGTTCTGGATTCCAAGGAAGCAGTCTTTACCTGTGGAATATTCAGACTGCTATGGAAGAATTGGTGGGCAACTACTGCCCATCGACGCCTAGTGTATACCTGAGTTTGACAAATGATGAAAGGGAGCACATTCGGCGTGAAATAGAAGTGGCAGGTGCATGCACGAAGCCATTGCACGGGGGGACTGGAGAAGCTGAATTTTGGGCATCGATGCCTGTAGAATG 2003 0.4983 MPPQQPRQRQHPAPPQIRHLDPKIWRACAGASVQIPTLHSRVYYFPQGHLEHASSAPQYLSPHVLARPVIPCRITAVHFLADPVTDEVFAKLLLQPVRELHPQDIGDSVESPDDDKVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQADPPVQTLSVTDVHGAIWEFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFMKNNRGEMFVGVRRAVRLTSGNGGDYATWCSPTGGGRNKVEELEQEENCAGLRGGQGFSRNGRGKLSAKSVAEAAELAAQNMPFEVVYYPRAGWSDFVVKAEVVEEAISIVWTPGMRVKMAMETEDSSRMTWFQGTVSSASAPDNGPWRGSPWRMLQVTWDEPEVLQNAKRVSPWQVEHVSPTPPLHTSFPPTKRFRASHGSGVLVDREGDPFFPMTGFTNSTMAYLNQTLLNYDTFPAGMQGARHDLFSVSSFSNFLSDNTHMCNGNSFGNNTVPKLKTVSTELNIGSSQSDNLSLDSPSSLHSISAEFVGTQSGNSTKLGAGSFQLFGKIIQTEQPAEIGLQSAGCTGGLMSHAPVPQQLKHLYSGRQEADYSFDLAVSNIKSKASSGFQGSSLYLWNIQTAMEELVGNYCPSTPSVYLSLTNDEREHIRREIEVAGACTKPLHGGTGEAEFWASMPVE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02155 667 Gene3D - 318 389 - -
Bva12g02155 667 CDD B3_DNA 119 220 IPR003340 GO:0003677
Bva12g02155 667 Gene3D - 117 222 IPR015300 -
Bva12g02155 667 SUPERFAMILY DNA-binding pseudobarrel domain 110 232 IPR015300 -
Bva12g02155 667 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Bva12g02155 667 PANTHER AUXIN RESPONSE FACTOR 15 557 - -
Bva12g02155 667 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Bva12g02155 667 SMART B3_2 120 222 IPR003340 GO:0003677
Bva12g02155 667 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva12g02155 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 557 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02155 Bva-Chr12 16684792 16690624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02155 18 570 B3 DNA Binding Superfamily AT1G77850 52.076 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva12g02155 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02155 - - qsu:112025063 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02155 12 16684792 16690624 Bva06g02775 06 17429530 17433218 BWGD
Bva12g02155 12 16684792 16690624 Bva12g02155 12 16684792 16690624 ECH