Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02136 ATGAGCAAACCCAGAAACCATAGAAAACCCACCAAACATgtcaaccaaaaccaaaaccagcAGCCCCAGAAAACAGAGAAACAACCTTCCTGGGCTGTCGTAAGAGGCCTATTGACTTGTAGAAGTGTCCAGActcaacagcagcagcagcagcaacagaaGCCGGAAGGGAAGCAACCAAAGCAGAAACAAGTACAGAGAAAGCTTCAAGAAGAACAAGTCCTAGAAGAAAGTGGCAAGAAatgcaagaaaatgaaatgttcAGGTTCTCTTTGTAATAATACAAAGGTCATGGCACGGCCTGAAACAGGAACGCCTGATATGCACAAGAAAAGGGTCTCACTGGGTGCTTCTAACAACGGTGATGCTTCTAGCAGATCCATGAAAGCTCCTCATGGTGAACTCAATGGAGTGGcgtctgcttcttcttcttcgttgTCAGCATCTTCTAATTCTTCTTCTGTTAGTGGGTCTTTTAGAGGAATGCCGTTCAGGAGGCTCTCTGGCTGTTATGAGTGTCGAATGGTGGTTGATCCTGTTCTGGGTTTCACCAGAGACCCTTCTCTGAGGAGTAGCATTTGTGCTTGCCCCGAGTGTGGTGAGATCTTCATGAAAGCTGAAAATTTGGAGCTTCACCAGGCTGTTAAACATGCAGTATCTGAACTGGGTCCTGAAGATACAAGCAAGAACATAGTGGAAATTATATTCCACTCAAGCTGGCTCAAGAAACAATCTCCAGTCTGCAAAATAGATCGCATCCTTAAGGTCCATAACACCCAGAGGACTATCAGCAAATTTGAAGAGTATAGAGACTCCATCAAGGCCAAAGCAACGAAACTTTCTAAGAAACACCCACGTTGCATAGCAGATGGCAATGAACTGCTGAGGTTCCACTGCACCAGCTTTTCATGCTCACTAGGCCTAAACGGATCCTCCAACCTGTGCAACTCAATACCACAATGCAATGTCTGTAGCATAATCAAGAATGGTTTCAAGGTGGCCGGAGAATTGAATGGAGGAACTGCTGGGAAAGGGATATTGACAACGGCGACAAGCGGGAAGGCCCACGATAAAGCTTTGGTTTCAACAGATGACAACGACAAGAGGGCAATGCTGGTTTGCCGGGTGATTGCAGGCAGAGTAAAGAAGAATAATCTGGAAGTAAATATGGAGGAGTACGATTCAGTTGCAGGGGCTGTTGGGGCTTATTCCAATGTGGATGAGTTGTATGTCTTCAACCCAAGAGCAATATTGCCTTGTTTTGTTGTAATCTACAGGGGTTTTTG 1286 0.4215 MSKPRNHRKPTKHVNQNQNQQPQKTEKQPSWAVVRGLLTCRSVQTQQQQQQQQKPEGKQPKQKQVQRKLQEEQVLEESGKKCKKMKCSGSLCNNTKVMARPETGTPDMHKKRVSLGASNNGDASSRSMKAPHGELNGVASASSSSLSASSNSSSVSGSFRGMPFRRLSGCYECRMVVDPVLGFTRDPSLRSSICACPECGEIFMKAENLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTISKFEEYRDSIKAKATKLSKKHPRCIADGNELLRFHCTSFSCSLGLNGSSNLCNSIPQCNVCSIIKNGFKVAGELNGGTAGKGILTTATSGKAHDKALVSTDDNDKRAMLVCRVIAGRVKKNNLEVNMEEYDSVAGAVGAYSNVDELYVFNPRAILPCFVVIYRGF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02136 428 MobiDBLite consensus disorder prediction 137 157 - -
Bva12g02136 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
Bva12g02136 428 MobiDBLite consensus disorder prediction 39 59 - -
Bva12g02136 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 30 426 - -
Bva12g02136 428 MobiDBLite consensus disorder prediction 13 28 - -
Bva12g02136 428 MobiDBLite consensus disorder prediction 1 70 - -
Bva12g02136 428 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Bva12g02136 428 SUPERFAMILY ADP-ribosylation 219 427 - -
Bva12g02136 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 30 426 - -
Bva12g02136 428 MobiDBLite consensus disorder prediction 96 157 - -
Bva12g02136 428 Gene3D - 218 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02136 Bva-Chr12 16554938 16556844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02136 27 426 C2H2 Transcription Factor Family AT1G75710 44.165 4.23e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02136 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02136 - - zju:107421015 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02136 12 16554938 16556844 Bva12g02136 12 16554938 16556844 ECH