Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02131 ATGGCACAGGCAGAGTCTCAGAGATCTACAGGCACTGTAAAATGGTTTAATGGATACAAAGGCTTCGGATTCATAGCTGCAGATGATGGTGGTGACGATCTTTTTGTTCATCATAGTTCGATCCGATCCGATGGTTATCGGACCTTATACGATGGTCAGAAAGTGGAGTTTATTGTGGATTATGACGAGGGTGGACGGACCAAAGCTGTTGATGTAACAGCTCATGTCAGATCTAGCCGTTTTGACGGTTTTCGAGGTAGTGGCAGGGGGAGAGGAGCTTATGGTGGCAGGGGCAGGGGGGTTGGTTATGACGGCTATGGCGGACGCTATGGTGGTGGTGAGGGTTATGGGTATGGTGGAGGTGCAGGGTTTGGGAGAAGAGGTGGTAGCTACGGTGGTGGAGGTGGAAGatttggtggtggtggtggtggtgttgAATGTTATAATTGTGGGCGAATGGGTCATCTGGCGAGAGATTGTTATCAAGGTAGTAGTGGCGTGACTCGGAGACGCGGTGGTGGCATTGGCGGCGGCGGAGGAGCGGCAGGAGTGTGTTTCAATTGTGGGGAGGAAGGGCATTTTGCCAGGGAATGTCTCAATGTTGAGAAATG 611 0.491 MAQAESQRSTGTVKWFNGYKGFGFIAADDGGDDLFVHHSSIRSDGYRTLYDGQKVEFIVDYDEGGRTKAVDVTAHVRSSRFDGFRGSGRGRGAYGGRGRGVGYDGYGGRYGGGEGYGYGGGAGFGRRGGSYGGGGGRFGGGGGGVECYNCGRMGHLARDCYQGSSGVTRRRGGGIGGGGGAAGVCFNCGEEGHFARECLNVEK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02131 203 SMART csp_8 10 75 IPR011129 GO:0003676
Bva12g02131 203 Gene3D - 181 203 - -
Bva12g02131 203 Gene3D - 142 172 - -
Bva12g02131 203 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Bva12g02131 203 CDD CSP_CDS 10 73 IPR002059 GO:0003676
Bva12g02131 203 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Bva12g02131 203 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Bva12g02131 203 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Bva12g02131 203 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Bva12g02131 203 Gene3D - 1 73 IPR012340 -
Bva12g02131 203 Pfam 'Cold-shock' DNA-binding domain 10 73 IPR002059 GO:0003676
Bva12g02131 203 ProSiteProfiles Zinc finger CCHC-type profile. 185 198 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 200 - -
Bva12g02131 203 Pfam Zinc knuckle 146 160 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 Pfam Zinc knuckle 184 198 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 ProSiteProfiles Zinc finger CCHC-type profile. 147 160 IPR001878 GO:0003676|GO:0008270
Bva12g02131 203 SUPERFAMILY Retrovirus zinc finger-like domains 137 200 IPR036875 GO:0003676|GO:0008270
Bva12g02131 203 SUPERFAMILY Nucleic acid-binding proteins 6 73 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02131 Bva-Chr12 16526573 16527184 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bva12g02131 CSD 5.4e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02131 - - pda:103701257 122.479