Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02120 ATGGATGTTATCCCTGGGCTTGACTTTTCCGATTACAGCACCACCACCAGCCCTACAGACGACGACGACCGCGGTTGTAACTGGAACCACTGGTCCCCGGTGGTCAACTGGGACAGCTTCACCGCTGCCCAAGATGATTTCCACGACTTCATCGAATCCACGATGTACGACACTGGAGTGCTGAACCCAGATAATAGCAGCGGCGTGGAAGAAGAAGGGTCCAATATTTCTGCTTCCACCACCTCGACGGAGGTGACCTTGATGGATATTGTTGAAGAAACCAACGGTGATGATTTCAAAGGTCTTAGGCTGGTGCATCTTCTGATGGCGGCCGCAGAGGCCCTCACCGGCGTTAACAAGAGCCGCGAACTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTGTCTCCCACCGACGGCACCAACATGGAAAGGTTGGCAGCGTATTTTACCGACGCCTTGCAAGGTTTGCTAGAAGGCGCGGCAGGGGGTGGGTGTGCTGCGCACAATAAGCGTTTTATAAGCAACGTACCTCGCCATCGCGATgaaaatcatcatcatcaaacgGACATGCTGGCAGCGTTCCAGCTGCTTCAGGACATGTCTCCTTACGTGAAGTTCGGCCACTTCACGGCGAATCAGGCCATCTTAGAGGCCGTGGCCCACGATAGGCGGGTCCACATAGTGGACTACGACATCATAGAAGGGATCCAATGGGCCTCGTTGATGGAGGCGCTCGCCTCTAGGAAGGATGGCCCACCGGTCCCACACCTTAGAATCACCGCATTGTCAAGAGGAGGCAGCGGCAGCAGCGGCCGTAGATCAATCGGTACCGTCCAAGAGACCGGTCGCCGATTGACAGAGTTCGCCGCCTCCATCGGTCAACCCTTCTCGTTTCATCAATGCAGGTTGGACTCGGACGAAACGTTTCGACCGTCATCGTTAAAGTTGGTCCGAGGGGAGGCCTTGGTGTTCAACTGCATGTTAAATCTACCCCACCAGAGTTACCGTTCACCCGATTCGGTGGAGTCTTTTTTAAACGGGGCGAAGACGTTGAACCCGAGACTGGTTACCTTGGTAGAAGAGGAGGCAGGGCCCACTGGGGATGTGGGGTTTGTAGGGCGGTTTATGGACTCGTTGCACCATTATTCAGCGGTGTATGATTCTCTGAAGGATGGGTTTCCGATCCAAAACCGAGCCCGGGCGTTGGTGGAGAGAGTCTTTTTGGGGCCCCGAATAGCGGCCTCGTTGGCACGGATATACAGAACTGCCGGAGAAGAGGAAAGAGGGTGGTGGGGGGAGTGGTTACGTGGGAATGGGTTCGAGGGTGTTTCAATTAGCTTTGCAAATCATTGCCAGGCAAAACTGTTAATGGGTTTATTCAACGATGGGTATAGGGTGGAGGAGTTGGTTAGCAATAAGTTGGTGTTGGGATGGAAATGTAGGCGTTTGTTTTCCGCTTCTGTTTGGTCATCACCTTCATCTCACAGTACATA 1499 0.5297 MDVIPGLDFSDYSTTTSPTDDDDRGCNWNHWSPVVNWDSFTAAQDDFHDFIESTMYDTGVLNPDNSSGVEEEGSNISASTTSTEVTLMDIVEETNGDDFKGLRLVHLLMAAAEALTGVNKSRELARVILVRLKELVSPTDGTNMERLAAYFTDALQGLLEGAAGGGCAAHNKRFISNVPRHRDENHHHQTDMLAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIIEGIQWASLMEALASRKDGPPVPHLRITALSRGGSGSSGRRSIGTVQETGRRLTEFAASIGQPFSFHQCRLDSDETFRPSSLKLVRGEALVFNCMLNLPHQSYRSPDSVESFLNGAKTLNPRLVTLVEEEAGPTGDVGFVGRFMDSLHHYSAVYDSLKDGFPIQNRARALVERVFLGPRIAASLARIYRTAGEEERGWWGEWLRGNGFEGVSISFANHCQAKLLMGLFNDGYRVEELVSNKLVLGWKCRRLFSASVWSSPSSHST 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02120 499 MobiDBLite consensus disorder prediction 1 22 - -
Bva12g02120 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 493 IPR005202 -
Bva12g02120 499 PANTHER SCARECROW-LIKE PROTEIN 26 11 493 IPR030028 -
Bva12g02120 499 ProSiteProfiles GRAS family profile. 95 492 IPR005202 -
Bva12g02120 499 Pfam GRAS domain family 104 491 IPR005202 -
Bva12g02120 499 MobiDBLite consensus disorder prediction 258 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02120 Bva-Chr12 16483918 16485417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02120 88 493 GRAS Transcription Factor Family AT5G41920 34.634 6.68e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva12g02120 GRAS 4e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02120 - - pvy:116133868 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02120 12 16483918 16485417 Bva12g02120 12 16483918 16485417 ECH