Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02117 ATGTCTTTGAGCCCTCCTCGAGTGAGGACTAATGGGCAACCCCGGAATTACCAGCTCTATTGGTGCTTTCAGTGCAATCGAATGGTCAGGGTCGCCTCCACAGACCCGTCTGAGATTCTCTGCCCTCGCTGTTTCGGGGAATTCCTCTCTGAATTAAATATACCAAGGCCTAGACTCGTTGTCGATTTCACCACTCACGATCCATCCCCAGAAGCACGTTTACTCGAAGCGCTTGCTCTGATGCTTGAACCACCAATAAGGCGCTCTGGCAGCCGTCGCCATGACCCGGGAGCTGAATCTCCAAGACGCTATCATTGGATTCAGAGACAACCTCGCAACAGGGAACAAGAAGACGGACGCCATTCGGAACTAGGTCAGCGTGAAGACATTCCTGTCAGTCATGTGAGACGTCCACGATATCATGGTGAGCTTGATTTTGCTAATGATGTAGAGATCAGAGCGGATGGGTCGGACCCAGAACCTGGAATCCAACCTCGACCCCGGACATGGATAATTCTTCCACCAATGGATCCTTCTGTTCCATTTGAACCAATTCCTCGACTTCGACGAGCAGGTCCTATCCCACGTGGGGTTAATCCAAGAGACTACTTTTTGGGGACGGGTCTGAACGAATTGATTGAACAATTGACTGAGAATGACCGACAAGGTCCGCCGCCGGCGCCGGATAGAGTAATCAATGCGATCCCGACGGTGAAAATCTCGGAGGCCCATTTGAAGGAGAACTCTCATTGCCCCGTTTGCCAAGAGGAGTTTGAAGTTGATGGGGAAGCAAGGGAGTTACCCTGCAAACATATATACCATTCGGATTGTATTGTTCCTTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGCCGGCTAGAGGTGCCGGTGTCTTCTGACTCCGATGAATCTCAGGACGGTGGAGGAGGTAGGTTGCGGAGGTGCCTGAGGTGGACGCAATTGGCTTCTTTGTGGCCTTTCCATGGAAGGCATCGACGGGTTAACCCAGAGAATGCCGCAGTTTCTCCAACTCCAAGGGGTGATAATTA 1049 0.5138 MSLSPPRVRTNGQPRNYQLYWCFQCNRMVRVASTDPSEILCPRCFGEFLSELNIPRPRLVVDFTTHDPSPEARLLEALALMLEPPIRRSGSRRHDPGAESPRRYHWIQRQPRNREQEDGRHSELGQREDIPVSHVRRPRYHGELDFANDVEIRADGSDPEPGIQPRPRTWIILPPMDPSVPFEPIPRLRRAGPIPRGVNPRDYFLGTGLNELIEQLTENDRQGPPPAPDRVINAIPTVKISEAHLKENSHCPVCQEEFEVDGEARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVSSDSDESQDGGGGRLRRCLRWTQLASLWPFHGRHRRVNPENAAVSPTPRGDN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02117 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 298 IPR013083 -
Bva12g02117 349 CDD RING-H2_RNF126_like 251 292 - -
Bva12g02117 349 Pfam Ring finger domain 250 292 IPR001841 -
Bva12g02117 349 MobiDBLite consensus disorder prediction 86 131 - -
Bva12g02117 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 88 - -
Bva12g02117 349 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Bva12g02117 349 PANTHER - 164 310 - -
Bva12g02117 349 ProSiteProfiles Zinc finger RING-type profile. 251 292 IPR001841 -
Bva12g02117 349 SMART ring_2 251 291 IPR001841 -
Bva12g02117 349 PANTHER - 11 88 - -
Bva12g02117 349 MobiDBLite consensus disorder prediction 153 174 - -
Bva12g02117 349 MobiDBLite consensus disorder prediction 87 131 - -
Bva12g02117 349 SUPERFAMILY RING/U-box 231 298 - -
Bva12g02117 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 164 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02117 Bva-Chr12 16463441 16466387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02117 223 327 C3H Transcription Factor Family AT1G68180 44.444 1.86e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02117 K11982 - qsu:112032941 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02117 12 16463441 16466387 Bva12g02117 12 16463441 16466387 ECH