Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02115 ATGGTTAAGAAGATGCACGCAGAGGCATCAAAGCCAGTGCAATCGCTGTGTTCATCGGGATCATCATCAGCAGCAGCAGAAGGTAAAAAGAAGTACAAGGGAGTGAGGATGAGGAGCTGGGGTTCGTGGGTATCGGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTGGGCTCTTATTCAACAGCAGAGGCTGCAGCCAGAGCCTATGATGCTGCACTTCTGTGCCTTAAAGGCTCAAAAGCCAATCTCAATTTCCCTTTAAGTGCTTCCTCACACTACATTCCGCAAGACGCTGTCATGTCCCCAAAATCAATCCAAAGAGTAGCTGCAGCTGCAGCTGCAGCCAACAGTTTCGTTGACAATGCCAGCAACCCACCGTCTCCTCCTCCTCCCTCCACCTCATCATCCTCAGTTTCCTCTCCATCAATGACTTATTCGCCGTCTGATCAGATCGACGATGATGCCTCGCTAATATCATCTTTTGGGGCACACGAACCAACGGCTGTGATGGAATCTTGGTACAACTTTGATAGTCTACAATCCCCAAAATACATTGATCAAATGCTCAGTGGTCCTCTGTTTGATATTGATATGCACATACCTCATTCTCACCTGCTTGATGACTTATATGAAGAAGAAAGCGATATTCGTTTGTGGAGCTTCTGCTG 674 0.4688 MVKKMHAEASKPVQSLCSSGSSSAAAEGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSKANLNFPLSASSHYIPQDAVMSPKSIQRVAAAAAAANSFVDNASNPPSPPPPSTSSSSVSSPSMTYSPSDQIDDDASLISSFGAHEPTAVMESWYNFDSLQSPKYIDQMLSGPLFDIDMHIPHSHLLDDLYEEESDIRLWSFC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02115 224 MobiDBLite consensus disorder prediction 121 151 - -
Bva12g02115 224 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Bva12g02115 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 224 - -
Bva12g02115 224 MobiDBLite consensus disorder prediction 1 30 - -
Bva12g02115 224 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Bva12g02115 224 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Bva12g02115 224 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Bva12g02115 224 PIRSF PTI6 3 136 IPR017392 GO:0003700
Bva12g02115 224 PIRSF PTI6 134 223 IPR017392 GO:0003700
Bva12g02115 224 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Bva12g02115 224 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Bva12g02115 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 9 224 - -
Bva12g02115 224 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Bva12g02115 224 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02115 Bva-Chr12 16455670 16456885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02115 32 223 AP2-EREBP Transcription Factor Family AT1G21910 52.000 4.77e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g02115 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02115 - - gmx:100813615 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02115 12 16455670 16456885 Bva12g02115 12 16455670 16456885 ECH