Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02079 ATGGCAGAGGTGATCAGTCCCATGGACGTTGACGACGATAACAATAATCTCTCTGCGAGGCCCGACAAGGGGAAAAGCGCCATCGTTTCGGCCCCCGCGCCCGACGGCAAGGCCACTCCCTGGGTGGAAAAGTATCGCCCTCAGTCTCTCGACGACGTCGCTGCTCATCGTGATATTGTTGATACCATTGATAGGTTGACCAATGAGGGTAGGTTGCCCCACCTTCTATTGTATGGCCCTCCTGGCACTGGCAAAACATCAACCATTCTGGCGGTGGCACGTAAACTATATGGAGCACAATACCACAATATGATTTTGGAGCTCAATGCATCAGATGATAGGGGAATTGATGTTGTACGGCAACAGATTCAAGATTTTGCTAGCACTCAGAGCTTTTCATTTGGTCTCAAGTCATCAGTAAAGCTGGTTTTGTTAGATGAGGCGGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAgTGATTGAGAAATACACAAAAAATACTAGGTTTGCACTTATCTGTAATCACGTAAACAAGGTTATTCCAGCACTGCAATCAAGATGTACTCGGTTTAGGTTTGCCCCTCTTGATGGTGTTCATGTCTCTGCCCGACTGAAACATGTTATTAAGGCCGAAGGGCTTGATGTTACAGACAGTGGCTTAGCAGCACTTGTACGGCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTCTGCAGTCAACGTACATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACTTATGCACTGGCAATCCATTACCCAAAGACATTGAGCAAATATCTTACTGGCTTCTGAACGAACAATTTGCAGAGAGTTTTAAAAGAATATATGAAGTCAAGACAAGGAAAGGACTGGCCCTAATAGATATTGTGAGGGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGATGTTCGAGTACAGTTGATAAATGATTTGGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAATGCGAAGCTTCAGCTTGGATCACTTATTGCTTCTTTTACACGTGCTAGATCTGCCCTTGTTGCAGCAGCAGGATA 1088 0.4449 MAEVISPMDVDDDNNNLSARPDKGKSAIVSAPAPDGKATPWVEKYRPQSLDDVAAHRDIVDTIDRLTNEGRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGLKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKVIPALQSRCTRFRFAPLDGVHVSARLKHVIKAEGLDVTDSGLAALVRLSNGDMRKALNILQSTYMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFAESFKRIYEVKTRKGLALIDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNAKLQLGSLIASFTRARSALVAAAG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02079 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
Bva12g02079 362 PANTHER REPLICATION FACTOR C SUBUNIT 5 33 358 - -
Bva12g02079 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 256 IPR027417 -
Bva12g02079 362 MobiDBLite consensus disorder prediction 1 38 - -
Bva12g02079 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 33 358 - -
Bva12g02079 362 CDD AAA 59 197 - -
Bva12g02079 362 CDD HLD_clamp_RFC 198 260 - -
Bva12g02079 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Bva12g02079 362 SMART AAA_5 71 201 IPR003593 -
Bva12g02079 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Bva12g02079 362 Gene3D - 201 262 - -
Bva12g02079 362 Gene3D - 35 197 IPR027417 -
Bva12g02079 362 Gene3D - 263 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02079 Bva-Chr12 16246389 16250274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02079 1 361 Core DNA Replication Machinery Family AT1G77470 78.591 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02079 K10756 - gmx:100805231 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02079 12 16246389 16250274 Bva12g02079 12 16246389 16250274 ECH