Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02078 ATGTCAAAGTCTCCCTCTTCTGAACCACGGCAGTCCATTTACTCTTCTTGGACTagGGAATCTAATGGAGCAACAGGAGTGGATGATCCAGAATCTACTATGGCTACAGTTGCTCGTTTTATTGAGCAACTGCATGCCAACATGTCATCACCGCCAGAGAGAGAACTTATCACAACACGATTGCTAGGTATTGCTAGGGCAAGTAAGGATGCTAGAACACTTATTGGTTCTCATGCCCAAGCAATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTCAGGCAAAAGTTAATGTTGCTGCCTCTCTTAGTGTCTTGTGTAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGCATCCCACCATTACTGTCACTTTTAAAGTGTGAATCCACTGAGGCCAGGAAAGCAGCAGCTGAAGCAATTTATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTggtatgaaaatttttgttactgaAGGTGTTGTTCCAACGTTATGGGATCAACTAAATCCAAAGAACAAGCAAGACAAAGTTGTAGAGGGTTTTATTACCGGGTCATTAAGAAATTTGTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTCCTGTCTTCAGACAACGCTGTTGCTCAGTCAAATGCAGCTTCTTTGTTAGCACGTTTAATGTTGGCTTTTAGTGATAGCATCCCCAAAGTGATAGATTCTGGAGCAGTCAAAGCTTTACTTAAGCTTGTTGGTCtagaaaataacatttctGTTCGCGCAAGTGCTGCAGATGCTTTAGAGGCCCTTTCATCAAAGTCAACCAGGGCTAAGAAAGCTATTGTTAGTGCAGATGGAGTTCAAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAGGAGTGTATGCAGGGTAATTATGGCCAAGCTTTGCAGGAGCATGCAACTCGGGCTTTGGCAAATATCTGTGGTGGAATGTCTGCTTTAATACTATATCTTGGAGAACTTTCCCATTCTTCTCGCCTTGCTGCACCAGTTGGTGATATTATTGGAGCTCTTGCTTATACACTGATGGTCTTTGAGGAAAATCTTGATGTTGAAGGGGAAACCTTTGATGCAACTAAAATAGAGGATATTCTAGTAACACTACTAAAGCCTCGAGACAATCAGTTGATTCAAGAGCGGGTCCTAGAGGCTATGGCTAGTTTATATGGAAACATCTGTCTCTCCAAGTGGCTTAATCATGCAGATTCCAAGAAGGTTCTTATTGGACTAATAACTATGGCTGCTGCAGATGTGCAAGAGTGTCTGATACTTTCCTTAACAAGCTTGTGCTGTGATAAGTTGGGAATATGGGAGGCCATTAACAAAAGAGAAGGTATTCAGTTACTTATATCATTGCTGGGATTGTCCAGTGAGCAGCATCAAGAATATGCAGTTCAATTGCTAGCAATCTTAACTGATCAGGTTGATGACAGTAAGTGGGCAATCACAGCAGCTGGAGGGATCCCTCCACTGGTGCAGCTGTTAGAAGCAGGATCGCAGAAGGCAAGAGAGGAAGCAGCTCATGTTCTCTGGAATTTGTGCTGTCACAGTGAAGATATTCGTGCATGTGTCGAAAGTGCAGGGGCTATCCCAGCATTCTTATGGCTTCTGAAGAGTGGTGGACCTAGAGGACAAGAAGCTTCTGCTATGGCTCTTACAAAGCTTGTCCGCTCAGCTGATTCTGCTACCATTAATCAGCTATTAGCATTGCTTCTAGGAGACTCTCGAAGTTCAAAGGCCCATATAATCCGAATTTTAGGTCATGTACTCACAATGGCTTCCCACGAGGATCTCCTGCAAAAGGGTTCTGCACCTAATAAAGGGCTGAAATCTCTTGTCCAGGTTCTGAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCCGTCCTAGCTGATTTATTCAGCACAAGGCAAGACATTTGTGAGAGTCTGGCAACTGATGAGATTGTTCATCCTTGCATGAAGCTTTTGACCAGCAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCATTGAGTGCTCTCTCTCGTCCAACCAAGAGTAAATCTACATATAAGATGCCTTATATTGCTGAAGGGGATGTCAAACCACTAATCAAGTTGGCTAAAACTTCCTCTGTTGAAGCTGCTGAAACTGCCGTTGCTGCACTAGCCAATCTTCTTTTTGATCCCTCTATTGCAGCTGAAGCTCTAGCAGAAGATGTTGTTTCAGTTTTAACAAGACTATTGGCAGAAGGGACTTCAGAAGGTAAACAACATGCATCACGTGCACTTCATCAACTACTGAAGCATTTTCCTGTAGGTGATATTCTGAGGGGGAATTCTCAGTGCTGCTTCACTGTGCTTGCACTTGTCGATTCATTAAATGCAATGGATATGGAAGGAACTGATGCCGCAAATGTCTTAGAAGTAGTTGCATTGCTAGCCAGGACAAAACAGGGTGTCAACTTCACTTACTCTCCATGGTCTTCTCTTGTGGAAGTACCATCAAGCTTAGAACCTCTAGTCTGCTGCTTGGCTGAGGGACCCCCCCTAGTGCAAGATAAAGCAATTGAAATTCTGTCCAGGCTTTGTCAGGATCAACCAGTTTTGCTTGGTGACTTGTTGGTCACTAGGTCTAGTTCCATTGGTTCATTAGCTAATAGAATGATAAATTCCTCCAGTTTAGAAGTAAAAGTTGGAGGGGCTGCCTTACTCATTTGTGCTGCAAAGGAACACAAAGAGTTGTCAATGGATGTGATTGACGTTTCAGGTTATCTAAAACCATTAATATATGCTTTAGTTGATATGATGAAGCAGAACTCAAGCTGCTCTCCATTAGAAATAGAAGTCCAAACACCTAGAGGCTTTATGGAGAGAAATGCATTTCAGGAAGTTGATGAATTTGATATTCCTGATCCTGCCATGTTTCTGGGTGGTACTGTTGCCTTGTGGTTGCTTTCAATTATTGCTTCTTTCCATACAAAGAACAAGCTCACAATAATGGAAGCTGGTGGACTTGAGGCTCTTTCTGATAAGCTTGCAATCCATACTTCCAGTTCACAGGCAGATTACGAGGATACTGAAGGAATATGGATCAGTGCCTTGCTCCTGGCCATTTTGTTTCAAGATTCAAATGCTGTTCTATCTCCTGCAACAATGCGCATTATACCTTCTCTCACACTTTTGGTTAGATCTGATGAAGtgattgataaatattttgccGCCCAGGCTACGGCCAGTCTTGTGTCTAATGGTAATAAGGGAATAAAACTCGCCATTGCAAATTCTGGTGCTGTTGCTGGTTTGATAACTATAATTGGTTATATTGAGTCGGAGATGCCAAACCTTGTCGCTTTATCGGAAGAATTTTCGTTGTTGCAAAACCCTGATCAAGTCGTTTTGGATCACCTTTTTGAAATTCAAGATGTAAGAGTGGGATCTACTGCACGAAAATCCATACCCCTGCTAGTGGATCTGTTGAGACCAATACCAGAAAGGCCTGGTGCTCCACCAGTTGCTGTTAAACTCTTGACATGCATTGCAGATGAAAGTGATACAAACAAATTGATCATGGCAGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCTTTGAGCCCTCAAGAATCAACAGAGGCTAGTATTTGTGAGTTATTGCGAATACTGTTTTTCAATTCTGACCTTATCAAACATGAAGCATCAACAAGTTCCTTGAAGCAACTCATAGCTGTTTTGCGCCTTGGATCGAGAAATGCTAGATATAGTGCAGCGAGAGCACTTCAGGAACTTTTTAATGCGGAGAACATTAGAGAGTCTGAATTAGCTGCACAGGCCATTCAGCCATTGGTTGACATGCTTAATACAGCACCAGGGAGTGAGCAGGAGGCTGCTCTTGTTGCTTTGATTAAGTTGACTGCAGGAAATTCTTCAAAAGCATCTCTTTTTACGGATGTGGAAGGGAATCCACTTGagattttatacaaaatattatcttCTGCTTCTTCCTTGGAACTTAAGAGCAGTGCTGCACAGTTatgctttgttctttttggCAATAGCAAGTTCAGAGCTGATCCGATTGCCTCAGATTGCATAGAACCCCTTATATCTCTGATGCAGTCTGATTCTAGCTGTGCAATAGAATCTGGAGTTTGTGCTTTTGAGAGGTTGTTGGAAGATGAACAACAGGTGGAGCTTGCAGCAGCATATAATGTTGCGGATCTCCTTGTCAGTTTGGTTTCTGGTACAAATTATCAGCTTATTGAGGCTACCATATCTGCGCTCATCAAATTGGGCAAAGATAGGACACCCTGCAAATTAGACATGGTCAAAGCTGGCATTATTGATAACTGTCTCAAGTTACTGCATCAAGCACCTAGCTCATCATGGTCCACTATTGCTGAAATGTTCCGTATTTTAACAAACAGTAGTGCAATTGCTAGAAGTTCTACTGCTGCAGAAATTGTAGAGCCCCTTTTCCATGTTTTGCTACATCGAGATTTCAACTTGTGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCACAAAGTCTGGCAACCTTAAAGCTTACTCCCAGCCAAGTTATTGAACCGTTGATTTCTTTCCTAGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGCTATCTCATCTTCTAGCTCAGGAACATTTTCAACAAGATATTACAACAAAGAATGCGGTTGTTCCCCTTGTACAGCTTGCAGGAATTGGAATCTTAAACTTACAGCAAACAGCAATAAAAGCATTGGAAAAGATCTCCACAAGCTGGCCAAAGGCTGTTGCTGATGCTGGAGGTATTTTTGAACTTGCAAAGGTTATTATTCAAGATGACCCTCAGCCACCGCATGCACTCTGGGAATCTGCTGCTTTGGTTCTCTCGAATGTATTACATTCCAATGCTGACTACTATTTTAAAGTTCCTGTAGTGGTGCTTGTAAAATTATTGCACTCGAGTATGGAGAGTACAATTACCATAGCTCTTAGTGCTCTGATAGTTCATGAAAGAAGTGACGCATCAAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATGCTCTGTTGGACCTTTTAAGATCTCATAACTGTGAAGAAGCATCTGGGAGATTACTTGAAGCTTTATTTAACAACGTGCGAGTACGAGAAACCAAGGTATCTCGGTATGCAATAGCAACTTTATCACAGTATCTGTTGGATCCGCAAACCAGATCACAGTCAGGCAAGCTTCTTGCTGCTCTTGCTCTGGGAGATCTTTCCCAACATGAAGGACATGCTAGAGCTAGAGATTCTGCATCTGCATGTCGAGCATTGATAAGCTTACTTGAAGACCAGCCTAccgaagaaatgaaaatggtaGCCATTTGTGCATTGCAGAACTTTGTCATGAACAGTAGGACTAACAGACGAGCCGTTGCAGAAGCTGGTGGCATACTAGTTATTCAGGAATTGCTACTGTCTCCTAATCCAGAAGTTGCCGGACAAGCGGCCTtgctattaaaatttttgttttctactcACACTCTTCAAGAATATGTGTCGAATGAGCTAATCAGATCTTTGACAGCTGCACTGGAAAGAGAGTTGTGGTCAACTGCCACAATCAATGAGGAAGTTTTGAAAACTCTACATGTCATATTCATGAATTTCCCTAAGCTCCACACATCCGAAGCAGCAACTCTTAGTGTTCCTCATTTGGTAGGGGCACTCAAATCTGGTAGTGAAGTAGCTCAGGACTCCGTACTTGACACCTTATGCTTGCTAAGACATTCTTGGTCAACTATGCCAATAGATATATCAAAGTCTCAGGCTATGATTGCTGCTGAAGCCATTCCCATCTTGCAAATGCTCATGAAAACCTGCCCCCCAAGTTTCCATGAGAGAGCGGATAGCCTTCTACATTGCTTACCAGGTTGTTTAACTGTCACCATTAAACGGGGAAACAACCTCAAGCAAGCCGTGGGAAGCACAAATGCATTTTGCCAGTTGACAATAGGCAATGGTCCTTCAAGACAAACCAAGGTAGTGAGTCACAGTACTTCTCCAGAATGGAAAGAAGGATTCGCATGGGCATTTGATGTTCCTCCAAAGGGACAGAAGCTCTATATCATATGCAAAAGCAAGAATACTTTTGGAAAGACAACGCTTGGAAAAGTGACCATCCAAATTGATAAAGTTGTAACAGAAGGAGTTTACAGTGGATTATTCAGTCTTAATCATGACGGCAACAAAGATGGATCTTCTCGGACTCTTGAAATCGAGATAATCTGGTCCAACAGCATATCTAATGATGGCATTTG 6404 0.4174 MSKSPSSEPRQSIYSSWTRESNGATGVDDPESTMATVARFIEQLHANMSSPPERELITTRLLGIARASKDARTLIGSHAQAMPLFINILRNGTPQAKVNVAASLSVLCKDEDLRLKVLLGGCIPPLLSLLKCESTEARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDKVVEGFITGSLRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVAQSNAASLLARLMLAFSDSIPKVIDSGAVKALLKLVGLENNISVRASAADALEALSSKSTRAKKAIVSADGVQILIGAIVAPSKECMQGNYGQALQEHATRALANICGGMSALILYLGELSHSSRLAAPVGDIIGALAYTLMVFEENLDVEGETFDATKIEDILVTLLKPRDNQLIQERVLEAMASLYGNICLSKWLNHADSKKVLIGLITMAAADVQECLILSLTSLCCDKLGIWEAINKREGIQLLISLLGLSSEQHQEYAVQLLAILTDQVDDSKWAITAAGGIPPLVQLLEAGSQKAREEAAHVLWNLCCHSEDIRACVESAGAIPAFLWLLKSGGPRGQEASAMALTKLVRSADSATINQLLALLLGDSRSSKAHIIRILGHVLTMASHEDLLQKGSAPNKGLKSLVQVLNSSNEETQEYAASVLADLFSTRQDICESLATDEIVHPCMKLLTSKTQVVATQSARALSALSRPTKSKSTYKMPYIAEGDVKPLIKLAKTSSVEAAETAVAALANLLFDPSIAAEALAEDVVSVLTRLLAEGTSEGKQHASRALHQLLKHFPVGDILRGNSQCCFTVLALVDSLNAMDMEGTDAANVLEVVALLARTKQGVNFTYSPWSSLVEVPSSLEPLVCCLAEGPPLVQDKAIEILSRLCQDQPVLLGDLLVTRSSSIGSLANRMINSSSLEVKVGGAALLICAAKEHKELSMDVIDVSGYLKPLIYALVDMMKQNSSCSPLEIEVQTPRGFMERNAFQEVDEFDIPDPAMFLGGTVALWLLSIIASFHTKNKLTIMEAGGLEALSDKLAIHTSSSQADYEDTEGIWISALLLAILFQDSNAVLSPATMRIIPSLTLLVRSDEVIDKYFAAQATASLVSNGNKGIKLAIANSGAVAGLITIIGYIESEMPNLVALSEEFSLLQNPDQVVLDHLFEIQDVRVGSTARKSIPLLVDLLRPIPERPGAPPVAVKLLTCIADESDTNKLIMAEAGALEALNKYLSLSPQESTEASICELLRILFFNSDLIKHEASTSSLKQLIAVLRLGSRNARYSAARALQELFNAENIRESELAAQAIQPLVDMLNTAPGSEQEAALVALIKLTAGNSSKASLFTDVEGNPLEILYKILSSASSLELKSSAAQLCFVLFGNSKFRADPIASDCIEPLISLMQSDSSCAIESGVCAFERLLEDEQQVELAAAYNVADLLVSLVSGTNYQLIEATISALIKLGKDRTPCKLDMVKAGIIDNCLKLLHQAPSSSWSTIAEMFRILTNSSAIARSSTAAEIVEPLFHVLLHRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSSMESTITIALSALIVHERSDASSAEQMMEAGAIDALLDLLRSHNCEEASGRLLEALFNNVRVRETKVSRYAIATLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARARDSASACRALISLLEDQPTEEMKMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNPEVAGQAALLLKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHTSEAATLSVPHLVGALKSGSEVAQDSVLDTLCLLRHSWSTMPIDISKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQAVGSTNAFCQLTIGNGPSRQTKVVSHSTSPEWKEGFAWAFDVPPKGQKLYIICKSKNTFGKTTLGKVTIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNSISNDGI 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02078 2134 SUPERFAMILY ARM repeat 1649 2004 IPR016024 -
Bva12g02078 2134 SUPERFAMILY ARM repeat 37 798 IPR016024 -
Bva12g02078 2134 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2005 2111 IPR035892 -
Bva12g02078 2134 ProSiteProfiles C2 domain profile. 1987 2104 IPR000008 -
Bva12g02078 2134 Pfam C2 domain 2007 2106 IPR000008 -
Bva12g02078 2134 Pfam Armadillo/beta-catenin-like repeat 505 540 IPR000225 GO:0005515
Bva12g02078 2134 Gene3D - 626 838 IPR011989 -
Bva12g02078 2134 Gene3D - 28 365 IPR011989 -
Bva12g02078 2134 SMART arm_5 243 284 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 750 790 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 200 241 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1542 1583 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 623 662 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 709 749 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 110 150 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1457 1500 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 543 583 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1833 1873 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1707 1767 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 457 499 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1287 1328 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 286 335 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 1205 1246 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 501 541 IPR000225 GO:0005515
Bva12g02078 2134 SMART arm_5 664 704 IPR000225 GO:0005515
Bva12g02078 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 660 IPR000225 GO:0005515
Bva12g02078 2134 MobiDBLite consensus disorder prediction 1 31 - -
Bva12g02078 2134 SMART C2_3c 2007 2103 IPR000008 -
Bva12g02078 2134 Gene3D C2 domain 2006 2131 IPR035892 -
Bva12g02078 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 254 298 IPR000225 GO:0005515
Bva12g02078 2134 Gene3D - 850 1162 IPR011989 -
Bva12g02078 2134 SUPERFAMILY ARM repeat 859 1339 IPR016024 -
Bva12g02078 2134 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 13 2132 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Bva12g02078 2134 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 554 IPR000225 GO:0005515
Bva12g02078 2134 CDD C2 2008 2098 - -
Bva12g02078 2134 PANTHER - 13 2132 - -
Bva12g02078 2134 Gene3D - 1163 1343 IPR011989 -
Bva12g02078 2134 SUPERFAMILY ARM repeat 1343 1630 IPR016024 -
Bva12g02078 2134 Gene3D - 1627 2005 IPR011989 -
Bva12g02078 2134 Gene3D - 1344 1605 IPR011989 -
Bva12g02078 2134 Gene3D - 372 625 IPR011989 -
Bva12g02078 2134 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02078 Bva-Chr12 16235579 16245391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02078 431 699 U-box Gene Family AT2G23140 28.261 7.10e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02078 - - gmx:100780150 3506.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02078 12 16235579 16245391 Bva12g02078 12 16235579 16245391 ECH