Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02071 atggaaTGTCTGCAGCAAGGTAGTGATGCAGGTAGCAATCGCATCGCAGCCGTCGCAGTAACTCCGCCCACCGGTTCTCCACTGCCTGATCATGATGACCACTCAAATAATGAGAAACCTGGGTGGAGAAAGTTTCTGTCTTATGTAGGACCTGGTTTTCTCGTCTCCTTGGCTTACCTTGATCCTGGCAACTTGGAAACTGATCTCCAAGCTGGGGCTAACCACAGATAcgagCTACTGTGGGTGATACTCATAGGGCTGGTGTTTGCACTTATAATCCAGTCATTGGCTGCAAATCTTGGAGTAACTACTGGGAAACACCTTTCAGAATTGTGTAAAGCTGAGTATCCTTTGTTCGTCAAATACTGCTTGTGGCTCTTAGCCGAGCTTGCTGTCATAGCAGCTGACATACCCGAAGGCAcactAAAGAATTTTGCAGTTATTGGAACTGCGTTTGCGCTCAACATACTGTTCCACATCCCAGTTTGGGTAGGAGTTCTGTTGACTGGCTTCAGCACTCTCTTGCTTCTCGGTCTCCAGAGATTTGGgGTTAGGAAACTGGAATTGCTTATAACAGTTCTAGTTTTTGTAATGGCAGGATGTTTCTTTGGAGAAATAAGCTATGTGAGACCACCAGCTTCTGATGTCTTAAAGGGAATGTTTGTGCCTAAACTCAGTGGTCAAGAAGCCACAGGCGATGCAATTGCCCTTCTCGGTGCTCTTGTCATGCCCCACAACCTCTTCCTCCACTCTGCTCTTGTGCTTTCTAGAAAAGTACCCAGTTCCGTCAGAGGCATAAATGACGCTTGCAGATATTTCCTGATAGAGAGTGGGTTTGCTCTCTTCATAGCATTTCTAATTAACGTTGCTGTTGTTTCTGTATCGGGCGCTGTTTGCTCAACGGACAACCTTTCTAACGAAGATACAGATCGGTGCAGCGATATTACTCTTAATTCTGCTTCTTTCCTTCTCCAGAATGTCTTGGGAAAGTCCAGCTCAACCATTTATGGCATAGCACTACTAGCCTCGGGACAGAGCTCTGCTATTACTGGGACCTATGCAGGACAGTATATCATGCAGGGTTTCTTGGACCTCAAGATGAAGACATGGGCTAGGAACTTGATGACTAGGACCATTGCCATAACACCCAGTCTTATTGTCTCTATTATTGGTGGATCAGCCGGTGCAGGCCGGCTTATCATCATCGCCTCGATGATACTTTCGTTTGAGCTTCCATTTGCTTTGATTCCACTCCTCAAGTTTAGCAGCAGTACCACCAAAATGGGACCTCACAAGAATTCTATCATTATTATTGTGATATCATGGATCCTAGGCTTGGGGATCATCGGCATTAATGTGTACTACCTCAGCACTGGTTTCGTGGGTTGGCTAATCCATAGCAGCCTACCAAAAGTGGCAAATGTGTTTATTGGGATCATAGTGTTCCCTCTGATGGGAATATATGTTGTCTCGGTTATCTACTTAACCTTGAGAAAAGACATTGTTAAGACATTTATAGAGACCAAGAATGTCCCAATAATGCAAAACCGCTTGGAAAAAGGTCTCACCGATCCTAATGAACAAGTAGAAATGGGTGGAGTTCCTTACAGAGAAGATTTAGCTACTATCCCACTACCTGAATA 1643 0.4449 MECLQQGSDAGSNRIAAVAVTPPTGSPLPDHDDHSNNEKPGWRKFLSYVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLFVKYCLWLLAELAVIAADIPEGTLKNFAVIGTAFALNILFHIPVWVGVLLTGFSTLLLLGLQRFGVRKLELLITVLVFVMAGCFFGEISYVRPPASDVLKGMFVPKLSGQEATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFIAFLINVAVVSVSGAVCSTDNLSNEDTDRCSDITLNSASFLLQNVLGKSSSTIYGIALLASGQSSAITGTYAGQYIMQGFLDLKMKTWARNLMTRTIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIIIIVISWILGLGIIGINVYYLSTGFVGWLIHSSLPKVANVFIGIIVFPLMGIYVVSVIYLTLRKDIVKTFIETKNVPIMQNRLEKGLTDPNEQVEMGGVPYREDLATIPLPE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02071 547 PANTHER METAL TRANSPORTER NRAMP5 35 547 - -
Bva12g02071 547 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 Pfam Natural resistance-associated macrophage protein 66 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 35 547 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 184 205 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 159 178 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 372 389 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 344 363 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 PRINTS Natural resistance-associated macrophage protein signature 131 157 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bva12g02071 547 Hamap Divalent metal cation transporter MntH [mntH]. 29 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02071 Bva-Chr12 16197886 16200599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02071 10 547 Inorganic Solute Cotransporters AT1G15960 58.595 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02071 K21398 - gmx:100787785 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02071 12 16197886 16200599 Bva12g02071 12 16197886 16200599 ECH