Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02069 atggCGCCAGTACTGCAGAGCTCTCAGCCATGGGTCGAGAAATATCGGCCAAAGCAAGTGAAAGACGTAGCTCACCAAGACGAAGTCGTTCGAGTACTCACCAACACCCTCGAAACCGGAAGTTGTCCACATATGCTCTTCTATGGTCCTCCAGGAACTGGAAAAACCACAACCGCACTTGCAATTGCTCATCAGCTTTTCGGGCCTGAGCTCTACAAGTCTAGGGTACTGGAGCTAAATGCTAGTGATGACCGTGGGATCAATGTTGTTCGCACAAAAATCAAAGATTTCGCTGCCGTAGCTGTTGGTTCTGGTCAGCGTCACAGTGGTTATCCATGCCCACCATATAAGATTATTGTCCTAGATGAGGCAGATTCAATGACCGAAGATGCTCAGAATGCTTTGAGGCGCACAATGGAAACTTACTCCAAAGTTacaagattcttttttatatgcaaTTACATTAGCAGGATTATAGAGCCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCACTGTCAGAAGAAATAATGAGCAGCAGAATACTGTACATCTGTAAAGAAGAAGGGCTGCATCTTGATTCTGAGGCTACTGCTACCCTGAGTTCTATCTCTCAAGGTGATCTCCGTCGGGCTATTACATACTTGCAGTCAGCAGCCCGGTTATTTGGATCATCCATTTCTTCAAAGGACTTGATTTCTGTGTCCGGGGTCATTCCAGCAGAGGTTGTGCAGGCACTTCTTGCAGCATGCAAAAGTGGTAACTTTGATTTAGCAAACAAGGAAGTCAATAACTTTATTGCAGAGGGATATCCAGCATCTCAAATGTTATCTCAGCTACTCGAGGCCATCGTTGAAGCGGATGATATATCAGATGAACAGAAGGCAAGAATATCTAAGAAGTTGGGTGAAGCCGATAAGTTCCTAGTTGATGGCGCCGATGAATACTTGCAGCTTCTTGATGTGGCCAGCTGTACAATGCGTGCTCTTTGTAACATGCCAGAAGAATTTTCTTACGAGAGTTA 1028 0.4426 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRHSGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLHLDSEATATLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPAEVVQALLAACKSGNFDLANKEVNNFIAEGYPASQMLSQLLEAIVEADDISDEQKARISKKLGEADKFLVDGADEYLQLLDVASCTMRALCNMPEEFSYES 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02069 342 SUPERFAMILY post-AAA+ oligomerization domain-like 241 325 IPR008921 GO:0003677|GO:0006260
Bva12g02069 342 CDD HLD_clamp_RFC 174 233 - -
Bva12g02069 342 SMART AAA_5 41 174 IPR003593 -
Bva12g02069 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Bva12g02069 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 330 - -
Bva12g02069 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 330 - -
Bva12g02069 342 Gene3D - 3 173 IPR027417 -
Bva12g02069 342 Gene3D - 176 239 - -
Bva12g02069 342 CDD AAA 26 166 - -
Bva12g02069 342 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Bva12g02069 342 Gene3D - 240 329 - -
Bva12g02069 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02069 Bva-Chr12 16189195 16193307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02069 1 338 Core DNA Replication Machinery Family AT1G21690 80.236 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02069 K10755 - egr:104450918 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02069 12 16189195 16193307 Bva12g02069 12 16189195 16193307 ECH