LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02066	ATGAGTTTTCTGAGGCCATCTGCATTGTACCAGTTCCTGATCACTTCTCCTTCGCTGCGATGGATGCCTTGTCAAAGCTGGGGCTTTCTTCGATGGCCGGGTCTTGATGGGTTTATGAGGCTTTTGGTGGTGGTGCTTCTTTGGTCTACGTTTTCGGAGCTTCGTTACATACCCTCTTTATCTATGTACCCTACTCTTAATGTTGGGGATCGAATAATTGTTGAAAAGGCTTCATTTTACTTCAGAAGCCCCGCCATACATGATATTGTAACATTCCGGGATCCAACACAGCCTCCTGGAGATAGGACAGATGTTGTATTCATTAAAAGAATTGTGGCAAAAGCAGGAGACTTCGTTGAGGTTCGTAATGGTTGTCTATATGTCAATGGTGATGCTCAGAAGGAAGATTTTATAGCGGAGCCTCCAACATACACAACGGAATTAACACGTGTGCCCAAGGGTCATGTTTATATGTTGGGAGATAATCGCAATAACAGTTATGATTCTCATTATTGGGGACCACTTCCTGTTAAAAACATAGTTGGAAGATATGTCATGTCCTGTCACAGACCCCGTTG	578	0.436	MSFLRPSALYQFLITSPSLRWMPCQSWGFLRWPGLDGFMRLLVVVLLWSTFSELRYIPSLSMYPTLNVGDRIIVEKASFYFRSPAIHDIVTFRDPTQPPGDRTDVVFIKRIVAKAGDFVEVRNGCLYVNGDAQKEDFIAEPPTYTTELTRVPKGHVYMLGDNRNNSYDSHYWGPLPVKNIVGRYVMSCHRPR	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02066	192	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Bva12g02066	192	Pfam	Signal peptidase, peptidase S26	38	186	IPR019533	GO:0004252\|GO:0006465
	Bva12g02066	192	PANTHER	SIGNAL PEPTIDASE I	1	192	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva12g02066	192	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016021
	Bva12g02066	192	SUPERFAMILY	LexA/Signal peptidase	51	186	IPR036286	-
	Bva12g02066	192	Gene3D	Umud Fragment, subunit A	59	190	-	-
	Bva12g02066	192	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016021
	Bva12g02066	192	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	1	192	-	-
	Bva12g02066	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva12g02066	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva12g02066	192	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Bva12g02066	192	TIGRFAM	sigpep_I_bact: signal peptidase I	40	186	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02066	Bva-Chr12	16175203	16179260	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g02066	62	183	MADS-box Gene Family	AT1G29960	32.520	8.47e-11	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02066	K03100		-	fve:101292762	330.487

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva12g02066	12	16175203	16179260	Bva12g02066	12	16175203	16179260	ECH