Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02056 ATGGATCACTCTCCTCACTTCCTTCACCAGCACGCAAGGCGCGTTCCTGTTCTTCCTCATAATCCTCGCCATCCTCAGTTCCCTCAAGATCCCAATTTCCAAAATCCTCGCCCTCATCATTGTCCACCGCCTTCGGCACCGGCACTTCAAACGCCCCCCCCTCCTCCGCCACTTTCCTATCGCACCATCCATACCCCTCTTCCACCCCGCCCTTATAATCCTCCTCATCAATCCCAATTCGTTTTCAATACCCCATACTATGGCCACCACCCTGTTGAAGATGATCGCCCTGTATCAGCGGACCAACACCATGGTTTTTCACACCCTCTCTCTCATAAATTACCTGTTTTCGGTAACCCAGAAAACCGTTATGGTGTTTGCAACCCACCCAAGGTTCTGGCATACAATCGACTGTCCAGCCCTTACCCTCCCCTTGTTTTTGACAGAGAATCGCCTCAGCATTCGTTTGATCGTAAGCTTAGATACGATTCCGAGTGTAGGTCGAGGTTAAGAATCGACGGCATTGATGGACATGAAGCTAATGTAAGGGAAAATATCGTATGGAGTCGAGGTGATGAGATTTATCATCGCCGTGGGGATTTTGCATCGAATAATGATACGTCTTCTGGGGATTTTGGAATTTTGTCTGGCCAGTGTACATCATCGAGGGGTGTTGATTCTAAATCTGGAGGCTATGTTCACCTATCTGGTCTGGAACGTGGCAATGAAATATCTAGGGGTAATAGAAGAGACGGACGTGGTGAGAGCAAGAGGTGGATAAATGATAGGAAAGCTCCTAGAGGTTTACATGATTTATCTTTAGAATTGGACACTAACGATATTGATGCTGGTGCTAGTGATAGTGTTCGTTTTATGTCTGGGAAACGAGAGTATTATGGTTCAGAATTGGGCAGGTATAATAACAGAGGGAACAGGGAGGGTGCTCATGAATTAATTCGCACTCCAAAGAAACAAATACAGAAAAAGAGTGCTCTTCTTAGAATTCAAAcgtttaaaccaaattataGGAACCGTGAGATTGAGCAGTTACATTATACTGGCTATTCTGATGACTCTAACTCTAATTCCTTAAGAGGTAAAGAACAGCTTGAATATTCAGGTTATGATATGAAACCAGGCGAGAGAGAAGGAagccctgttgagcttgatatttcattcaaatctAATTCTCTGGTGGCCAAGGCTATTGTATCATCTTCAAGTTCTGCAATTGTTTCAGGTACCGATATGGCTGCATATTCTGATACTGATTTGATTCCtatacaaaagaaagaaaaggttatGGTAACTGATGGCGATTCTTCTGATTTACAATCGCCCAAACTATCGAATGGTGCTGTAAGTTTAACGAAGTCACCATGCATAGTAAGTGACACCTCTAGCTCTGGCAAGGACTTAAACTTACAAAAGAATGTCTCTAGTGGTCATAGTCATACTCAGCATACTCAGACTTGTTCTAATGCAGCACATAATTCTCAGGGAAAAAATGAGATGGTACAATCCCCTAAGGGCACTGTTTCAGGTGGAATTACCAATATTTGTTCAAGTAATGCATCTTCAAGGGTTgctaagaagaaaaaaattgtaaagagAGTGGTGAAGAAAGTTgttctaaattctaattcaCTTATGTCAAGTTCACTATCAGCAAGCACACATGATAGGACTGTGCAAGAGGATAATGCCACTGTCAATCCATCATTTGCCTGTAGTTCtgacaaaattgaaacttcTATGAAGGAGAAAATTACTACTGATGGCAAGTTGCCCATGCTGGAGTGTTTGCAGTCTTACAAAGGAAATCTATTGCCTGAAAACGAAAAGGAAGATGTATCTCTTCTGAGTGTACATTCCAGGTCTCAAGAATGTAGTACTGACGAAGATTCTCATAAAGGGGAAATAGCTAGGATTGAAAGAAGTGGAAACATTTCAATTTCTCCATCACATACTTCTAGtaacaaagataaaaagagtGATTCCGAGTGTCTAGATGCAGTTAATTTCCATGGTGTGTTGCAAAGCTTGCCAAATACTGGCAAAGTTACTAATTCACTACATGGAAGTGTTTTTTCTGACATCAATGACGTGAGAGATGTTAAAGAGCAATTTTATCAGAATGAAGTGTCCGTATCAGCTTCAAATGTAGGATATTCAGAGAATAGGCATCATGCAGGGGATGTTGTAAACTGCAGATTGTGGAATTCAGTTGACAATGTAATTAGCACAGATCTAAATACAAGTAATTTTTCTGATGATAGAGTTTCTGGCTTTAGTTCTAATGATCTTATGAATAATTTGCTAGAAAAAATTACAGTTTGTGACAGGGACAAAGAAGGCATTGTTTTTAAGGCATATTGCAAAATTAAGGTGCCTACAATAAATAccattttagaagaaaatccAGAGACTTCTATCTCTGTACCAAGCCATGGTTCTCTTAGTCTGGGGGAAATGAGGAATCAAAATGGTCCAGAATGCCTAAAAAATGCCAGAGCACACAAGCAGGATTCTGATAATGGCTCAACTAACTCAGATGATAATATCACAGTTTCCCATTGCGGTATCATGCATGATTTTGGAAAGCAAGTGTCCATGTCCTATGAAAACTTTACCACAGAAAATttcccaaattttaaaatttcagatGGATTTGGCGAAGAGGATACTAATAAGATTAACAAGAGAAAAGTTAGGAATCATTTAGACCTTTCAAGTTCAATGCTTGAGGACGTATCCAGTGAGACTTTAAATCCAATTAGCCTTCCATATGTTGTGGATACAGCCTTGAGTCTGTCTTTGAAGGATCAAATTCCTTCTGAAGTTTCAAATTCTGCCATTCAAAGGTTAGATTTCAGCTTTTTCAGCGTAGAAGGGGTCACTGTTTTGAATGGGAAAAAGAGGGTTTCAGAGGATAATGTTGTTGGGGGAAATAATGGCAATGACAGTGGAAACGGGACTTTACTTGTGTCTGAAAGGATGAAAGCCAGAGCGAGTCAACCCAATTTCACTCCATTTCGAGCTGAATTCAGTGATGCAATTGTGGTGACCAAATCCTGTGCGGAAGTTCCCGTTGGTATATGTGATAACCAAGAGCATCAGAAGGAAGGAGTTGCAGAGTCAAGGATGGCTATTCTTTCTGTTGCTCCGTCAATTCATTATCCAGAGGATACCTCTAAATTGCCCGATCATAATTTGGTTGGGGGATCTTTTGGCCCCATGAATGCCATTAGGGAAAATGTGAGTTCTGAGTGTTTGGAATTGCAACACCCATCTATTGGCTCTCGGTTAATTCTTGAGGACATGGTCATTCAAAATGTTAAATCGGCCTCTTACCCAATGTTAGAAGCTAAGGAGCAAGAAAATGCTACTCTAATTGTGCCTACAAATAATTCTCAAAATGACATTCTGGATATTAGAAATTTTACGGGAGAAAAGATGGATGTACAAGCTGAAGAAGAGATTGTTTCTCCCATTGAGACTCCTCAGTGCAAAACTTCTTCAGAACTCCAGTTTAGAGATTTTGTGCAAAGATCTCTAAGTGCTGATATGGGATGTCATGATCTCACTGTGGAGGATGATTTACCTCTTGAGAAAATGTATCCATCCAGTCCTGCTGAAGGTGATGGAGTCACTGCCAACAGTAACTCCGGCGATGAATTGGTTGGAGCAATTCCAGATGTACAATCAGATATGCATTATCCAGGAGCTGCACTTGAAGAACCTGACAGAAAGATTTCAGATTGTCAAGCAATCTATGCTGAAAACAGTTCAGGGGATGAAGAAAATCTGGATAGCAAGTCTATAGTTGAACATGGTTCTGACTTACCTGCTTCTACTTCTTCTACGCATCATATTGTAAAGAATTTGAAGTCAGATGTACATAATAACCCAATCATGGGGAAGATATTGCCAGAGTCTTTGCAAGTTTCTTCCAAAGTTTCAACTCTGGGCCTGAATTCATCCAGTTCAGAATTAAATGGAGGCAAAAATCAGCCAGATTCTGTTACTTCTAGGACTTTCCAGAGTCATTCATCTCGCATTTTTTCTGCATCAAAGGCATCCACTTCTTCAACCCATGTTTCAACACTGCAAACATGGCATCGTACAGTTGCTAATTCTCCTGCTTCTCTACCCGCAAGCAAACCTGCTTCAGGTTCTCTTCCTCCCAAAAGGCCAATTTCTGTAAAGAAAGGGAACTTACAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTAAGGAAGCCTACACCAACTGCTGCTTTACCACAAGTCTCCCCAGTTAATCAGTTGCCTTCTTTGGGATTAGATGAATCTCGAAAGAGCAATAGATCTGAAAGAAGGATTGATGTCACAGATCAACCAAATCTCCTAAAAACAGGAGTAATCAATGATCCTCTTGAGAGGCAGAGAACACCTAAGCTGCCCATTGACACCAAATCACCTAATAGTGCTGCCACTTCATTGGAGGACAATAGATTATCCCCACTGGTAGAACCTCTCTTCTATGGTTGCCCTGAAGGTGCATTATATGCTGGAAAATTCCCAGAAATCAATGATATGCCAAATTCCGTGGAGGATGTGCTGAAGTGTTCTGGAATTCCTGAAAATCAAACTGGTCCATCTAATGATGGGGAGAGCCAAATTGAAGGAAATGATGGAAATTTGTCTCCTCTGAATACAAATAGAATAGTATATGTAAAGCGCAAATCAAACCAATTGGTGGCAACTTCTAGTTCTTGTGATCTTTCTGTCTCTGCAGATGACAATGCCCAAACATCCTCGTCTGGTGGCGACTACAAGAGGAGCAAAGACCAATTAGTTATTACTGCATTTGAAGGTCAAATCAACCAGACAGCTGCAATGCCTAATAGGACTGTAAAATCTGATGGGCAAGGCGCTTGTAAGGTTCTTTGCAACAGGAGGTTTAGCAAGAGGCGATCACATAAGACTTCTGGAAGGTCATGCAACCCTTTGCGAGTGTCATTGGCGTGGACACTCTGTGGCACAAAGTCTATAAAAAAAGACAGAGAATCAGCATTTCGTGAGAAAGTTTTGCCTCACTGGTTTCCATGGAAAAGAGCAACATATCTGAGAAGCTTCGTTCATAATCTTGCAGTGAGTTCCAATAGTAGTTCCTCATATGCAATCAGGAAATTGCTTTTGTTAAGAAAGAGGAATACTGTTTACACTAAGTCGACTTGTGGATTTTCCCTTTGGAAGTCCAAGGTATTAGGTGTTGCAGGATCTAGTTTGAAATGGTCAAAATCCATTGAGAGGCGCTCAAAGAAAGCTAGTGAGGAAGCCACACTGTCAGTTGCTGCTGTagagaggaaaaagagagagcaGAAAGATGCTGCTTCTATCAGTTCTGGGGCTAAGAGGGAACGTATATTTCGCATTGGTTCAATTCGCTACAGAATGGACCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAATccttttcttctgcttctaCTGAGCCAGGACCAGATGGCAAAAGAACTTATATACCAAGGAGATTAGTAATTGGAAATAATGAATATGTCCGAATTGGCAATGGTAGTCAGCTCATTAGAGACCCAAAGAAACGAACTCGTATGTTGGCTAATGAAAAAATTAGATGGAGTTTGCATACTGCCAGGCAGCGGTTGGCTCGAAAGAAGCAGTACTGCCAGTTCTTCTCTAGATTTGGAAAATGTAACAAGGATGGGGGGAAGTGTCCTTATATTCATGACCCCTCAAAGATCGCTGTTTGTACTAAGTTTCTAAATGGGTTATGTTCCACTCCCAACTGCAAATTAACTCACAAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTACTTTTTGCAAGGCTTATGCACAAACAGGAATTGCCCGTACAGACATGTCAATGTGAACCCTAAGGCCTCTATTTGTGAACAATTTCTTAGGGGCTATTGTGCCCATGGCAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCTACTTTTGAAGCAACAGGTACCTGTGCTCAGGGAAACAAATGCAAGCTTCACCATCCCAAAACACCAAGCAAGggaaagaaagggaagagaTCTGAAGAACGGAACTGTAAAGGGCGCTATTTTGGTTCGATACCTATTGATCTTTCTGAACCTGGGATGATGGTGGCTCCTCCAAGGCAATGTGAACAAAGTAGTGATAACCTAGAAGGTGAACTCTCTGACTATATCAGCTTGGACGTTGTCGAGGAAGAACTTGCAGAAAGTATTGGTCAAGCATACAAGCGAGCAAAATTTTGTGACAGCGATTCCATGGATTTACATTTGGATGATGTTGATGAACTGATTAAACCAGTTCGTATAATGAAAGAGAATTTCCTAGCGCTGTCATCTCCACTGTG 6416 0.4001 MDHSPHFLHQHARRVPVLPHNPRHPQFPQDPNFQNPRPHHCPPPSAPALQTPPPPPPLSYRTIHTPLPPRPYNPPHQSQFVFNTPYYGHHPVEDDRPVSADQHHGFSHPLSHKLPVFGNPENRYGVCNPPKVLAYNRLSSPYPPLVFDRESPQHSFDRKLRYDSECRSRLRIDGIDGHEANVRENIVWSRGDEIYHRRGDFASNNDTSSGDFGILSGQCTSSRGVDSKSGGYVHLSGLERGNEISRGNRRDGRGESKRWINDRKAPRGLHDLSLELDTNDIDAGASDSVRFMSGKREYYGSELGRYNNRGNREGAHELIRTPKKQIQKKSALLRIQTFKPNYRNREIEQLHYTGYSDDSNSNSLRGKEQLEYSGYDMKPGEREGSPVELDISFKSNSLVAKAIVSSSSSAIVSGTDMAAYSDTDLIPIQKKEKVMVTDGDSSDLQSPKLSNGAVSLTKSPCIVSDTSSSGKDLNLQKNVSSGHSHTQHTQTCSNAAHNSQGKNEMVQSPKGTVSGGITNICSSNASSRVAKKKKIVKRVVKKVVLNSNSLMSSSLSASTHDRTVQEDNATVNPSFACSSDKIETSMKEKITTDGKLPMLECLQSYKGNLLPENEKEDVSLLSVHSRSQECSTDEDSHKGEIARIERSGNISISPSHTSSNKDKKSDSECLDAVNFHGVLQSLPNTGKVTNSLHGSVFSDINDVRDVKEQFYQNEVSVSASNVGYSENRHHAGDVVNCRLWNSVDNVISTDLNTSNFSDDRVSGFSSNDLMNNLLEKITVCDRDKEGIVFKAYCKIKVPTINTILEENPETSISVPSHGSLSLGEMRNQNGPECLKNARAHKQDSDNGSTNSDDNITVSHCGIMHDFGKQVSMSYENFTTENFPNFKISDGFGEEDTNKINKRKVRNHLDLSSSMLEDVSSETLNPISLPYVVDTALSLSLKDQIPSEVSNSAIQRLDFSFFSVEGVTVLNGKKRVSEDNVVGGNNGNDSGNGTLLVSERMKARASQPNFTPFRAEFSDAIVVTKSCAEVPVGICDNQEHQKEGVAESRMAILSVAPSIHYPEDTSKLPDHNLVGGSFGPMNAIRENVSSECLELQHPSIGSRLILEDMVIQNVKSASYPMLEAKEQENATLIVPTNNSQNDILDIRNFTGEKMDVQAEEEIVSPIETPQCKTSSELQFRDFVQRSLSADMGCHDLTVEDDLPLEKMYPSSPAEGDGVTANSNSGDELVGAIPDVQSDMHYPGAALEEPDRKISDCQAIYAENSSGDEENLDSKSIVEHGSDLPASTSSTHHIVKNLKSDVHNNPIMGKILPESLQVSSKVSTLGLNSSSSELNGGKNQPDSVTSRTFQSHSSRIFSASKASTSSTHVSTLQTWHRTVANSPASLPASKPASGSLPPKRPISVKKGNLQNTSYIRKGNSLVRKPTPTAALPQVSPVNQLPSLGLDESRKSNRSERRIDVTDQPNLLKTGVINDPLERQRTPKLPIDTKSPNSAATSLEDNRLSPLVEPLFYGCPEGALYAGKFPEINDMPNSVEDVLKCSGIPENQTGPSNDGESQIEGNDGNLSPLNTNRIVYVKRKSNQLVATSSSCDLSVSADDNAQTSSSGGDYKRSKDQLVITAFEGQINQTAAMPNRTVKSDGQGACKVLCNRRFSKRRSHKTSGRSCNPLRVSLAWTLCGTKSIKKDRESAFREKVLPHWFPWKRATYLRSFVHNLAVSSNSSSSYAIRKLLLLRKRNTVYTKSTCGFSLWKSKVLGVAGSSLKWSKSIERRSKKASEEATLSVAAVERKKREQKDAASISSGAKRERIFRIGSIRYRMDPSRRTLQRISDDESFSSASTEPGPDGKRTYIPRRLVIGNNEYVRIGNGSQLIRDPKKRTRMLANEKIRWSLHTARQRLARKKQYCQFFSRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASICEQFLRGYCAHGNECRKKHSYVCPTFEATGTCAQGNKCKLHHPKTPSKGKKGKRSEERNCKGRYFGSIPIDLSEPGMMVAPPRQCEQSSDNLEGELSDYISLDVVEEELAESIGQAYKRAKFCDSDSMDLHLDDVDELIKPVRIMKENFLALSSPL 2138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02056 2138 MobiDBLite consensus disorder prediction 623 644 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1324 1348 - -
Bva12g02056 2138 SMART c3hfinal6 2004 2026 IPR000571 GO:0046872
Bva12g02056 2138 SMART c3hfinal6 1924 1948 IPR000571 GO:0046872
Bva12g02056 2138 SMART c3hfinal6 1977 2003 IPR000571 GO:0046872
Bva12g02056 2138 SMART c3hfinal6 1950 1975 IPR000571 GO:0046872
Bva12g02056 2138 SMART c3hfinal6 1895 1923 IPR000571 GO:0046872
Bva12g02056 2138 MobiDBLite consensus disorder prediction 21 72 - -
Bva12g02056 2138 Gene3D - 1922 1977 - -
Bva12g02056 2138 ProSiteProfiles Zinc finger C3H1-type profile. 1977 2004 IPR000571 GO:0046872
Bva12g02056 2138 PANTHER CCCH ZINGC FINGER 380 2129 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1824 1846 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1539 1565 - -
Bva12g02056 2138 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 380 2129 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1542 1565 - -
Bva12g02056 2138 Gene3D - 1978 2039 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 465 513 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 14 72 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 623 665 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1446 1460 - -
Bva12g02056 2138 ProSiteProfiles Zinc finger C3H1-type profile. 1950 1976 IPR000571 GO:0046872
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1380 1496 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1429 1445 - -
Bva12g02056 2138 MobiDBLite consensus disorder prediction 1403 1417 - -
Bva12g02056 2138 ProSiteProfiles Zinc finger C3H1-type profile. 1895 1924 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02056 Bva-Chr12 16090061 16098774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g02056 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02056 - - lang:109337833 1698.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02056 12 16090061 16098774 Bva12g02056 12 16090061 16098774 ECH