Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02049 ATGGATATTGAAGATGGAGTCAGCAATGCTGATAATGCAGAATGTGCTGAAGGGGTTCAGTGCTTGAAAATTGAATCTACAATTAAGGGAGCGGCAATTGCAGATGAAACTGCTGTTGCTGAAGGGGTTCATTGTTTGAAAAGTGAACCTGTAAATAATGGGGTGGCTGTTTCGGGGGAGAATGATGTTGCTGAAGGTGTGCAAAGTGAAGCTGTAAATAATGGATTTGCAATTTCAGATTGGAATTATGTTGGTGAAGGGAGCCTTGATGGGATTCGGACTTACAAGAGGCGTAAGCAAGTGAAGTCGAGTAAAGAGAGCGAAATTCAAGAAGATTGCAGGGCATATGTCGAGGCGGCAAGTCATCTAGCGGAACAGGTTGTGAAGGAAACACGTAATCTCAATGTAGGCAGTACTTCTTACGGGCAATTCTATCCTCCTGTCAATGGCTCAGAAGAATATTCACATGGACCCTGGGGAAATATCGTACTAAGGCATCTGTATCAGTCATTAGGTGATGATAAGGGTGGCATTGAGGGGTGCATAAGGAAAGCACTGATGCATCGACCTAAAGCTAGTTGTGCCACTACAGTTAAGGAAGCTCATAAAATCGACAAAGACAGGCAAGAATGCTCTTCACAATTATCTCACAGATTACGGACTGAAGCTAATGGGAATACAGATGTCATGCTTGATAGATGTTTCACTAAATCAGATCGCCATAGTGTAACTGACATTTGTCAAGATGTACTCTGTCATATGTTTTCCtcagaaaaattcaatttgttaTGTAACGTGCTAAATGAAAACTTCAAGGGGATGCAGCCTGAAAGCGTATTTGACTTAAGTGTCATAAACTCAAGGATGAAAGAGGGAGCTTACGAACATTCACCCACACTTTTTTTGTCAGACATTCAACAGGTGTGGAAAAAGCTTCATGATACTGGTAACAAGATCGTTTCTCTTGCCAAGAGCCTTTCAAACATGTCAAGAAATTCTTACTATGGGCAGGCAGGAGTTTCAATGCACAGCACATTTGAAGATGAGAAGCTAGAGTTCTGTAACTGGGAATCTGACTCTCACATGAAACCGGAGCAAACAGACGAGCGTAGTACATACAAACTTTGCACTTGCAGGCATTGTGGAGACAGGGCAGATGGAACAGACTGTTTAGTTTGTGATTCATGTGAGAAGATGTATCACATCTCTTGTATAGAACCTGCTGTGAAAGAGATTTCCCACAAAAATTGGTACTGTGCCGATTGCACTGCTAGTGGAATTGGATCTCCACATCAGAATTGCAAGGTGTGTGAAAGGTTGAATGTCCCAAAGACTCAGAACAACATAGTTGGTCATGAAAACTTCCTTACAAATGAGGTGCTTCAGGAATTGGAAGATAACTCAAATTGTAATTATGATGGGCTTCAAGGATCTACAGCTGGGAAAGATTCGACTGTTTGTAGTGTTTGTGGAACTGACGTGGATGgggaaaatatgaaaatctgTGGGCACCCCTTCTGTCTCAGCAAACACTACCATGTAAGGTGTTTGACCAGGAAGCAGTTAAACTCCTATGGTCCACGGTGGTATTGCCCTTCTTGTCTATGCCAAGTTTGCCTCACTGATCAGGATGATGATAAGATTGTTATCTGTGATGGCTGTGATCATGGATACCATATCTATTGCATGAATCCTCCACGAACTTCTATTCCAAATGGGAAATGGTTCTGTAGAAAATGTGATGCTGGGATCCAGGCTATACGCAGGGCAAAAAAGGCATATGAGAGTAACAAACAGCGCAAAATGGGTCAAGGCAGCATAAGGCCATGTGGAAATCTTGGAAAGAAATGGAACAATAAACGTGGAAGGGAATTAGACAAAGGTGGAGGAATGGAGATGCTTTTGACTGCAGCCAATACTCTGAATAATGAAGAGAACATGGCAGCAAATTG 1952 0.416 MDIEDGVSNADNAECAEGVQCLKIESTIKGAAIADETAVAEGVHCLKSEPVNNGVAVSGENDVAEGVQSEAVNNGFAISDWNYVGEGSLDGIRTYKRRKQVKSSKESEIQEDCRAYVEAASHLAEQVVKETRNLNVGSTSYGQFYPPVNGSEEYSHGPWGNIVLRHLYQSLGDDKGGIEGCIRKALMHRPKASCATTVKEAHKIDKDRQECSSQLSHRLRTEANGNTDVMLDRCFTKSDRHSVTDICQDVLCHMFSSEKFNLLCNVLNENFKGMQPESVFDLSVINSRMKEGAYEHSPTLFLSDIQQVWKKLHDTGNKIVSLAKSLSNMSRNSYYGQAGVSMHSTFEDEKLEFCNWESDSHMKPEQTDERSTYKLCTCRHCGDRADGTDCLVCDSCEKMYHISCIEPAVKEISHKNWYCADCTASGIGSPHQNCKVCERLNVPKTQNNIVGHENFLTNEVLQELEDNSNCNYDGLQGSTAGKDSTVCSVCGTDVDGENMKICGHPFCLSKHYHVRCLTRKQLNSYGPRWYCPSCLCQVCLTDQDDDKIVICDGCDHGYHIYCMNPPRTSIPNGKWFCRKCDAGIQAIRRAKKAYESNKQRKMGQGSIRPCGNLGKKWNNKRGRELDKGGGMEMLLTAANTLNNEENMAAN 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02049 650 ProSiteProfiles Zinc finger PHD-type profile. 533 583 IPR019787 -
Bva12g02049 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 535 IPR013083 -
Bva12g02049 650 SMART PHD_3 486 535 IPR001965 -
Bva12g02049 650 SMART PHD_3 377 423 IPR001965 -
Bva12g02049 650 SMART PHD_3 536 581 IPR001965 -
Bva12g02049 650 ProSitePatterns Zinc finger PHD-type signature. 531 580 IPR019786 -
Bva12g02049 650 PANTHER D4, ISOFORM A 161 645 - -
Bva12g02049 650 Gene3D - 279 425 - -
Bva12g02049 650 SUPERFAMILY FYVE/PHD zinc finger 535 587 IPR011011 -
Bva12g02049 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 582 IPR013083 -
Bva12g02049 650 SUPERFAMILY FYVE/PHD zinc finger 362 423 IPR011011 -
Bva12g02049 650 PANTHER HISTONE ACETYLTRANSFERASE 161 645 - -
Bva12g02049 650 SUPERFAMILY FYVE/PHD zinc finger 482 534 IPR011011 -
Bva12g02049 650 Pfam PHD-finger 536 581 IPR019787 -
Bva12g02049 650 ProSiteProfiles Zinc finger PHD-type profile. 375 425 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02049 Bva-Chr12 16059546 16064731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02049 535 605 C2H2 Transcription Factor Family AT3G01460 45.070 1.15e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva12g02049 PHD 3.7e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02049 12 16059546 16064731 Bva12g02049 12 16059546 16064731 ECH