Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02027 ATGGAGGATTCTGCCTCTGGCTCAGCTGAAGACACCAAGACTTGTCCCCGTGGTCACTGGCGGCCCGCCGAGGATGAAAAACTCCGGCAACTAGTTGAGCAATATGGTGCCCAGAACTGGAATTCTATTGCTGAGAAGCTTCAAGGAAGATCAGgGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCGAGAATCAACAGAAGGCCATTTacagaagaggaagaagagagattacTGGCGGCTCACCGAATTCATGGAAACAAGTGGGCACTGATAGCCAGGCTTTTCCCGGGTCGAACTGATAACTCTGTGAAGAATCACTGGCATGTTATAATGGCACGAAAGCAAAGAGAACAATCTAAGTTATGTGGCAAAAGAAGCTTCCAAGAGGTTTACAATGATTCTAACTTTTCCTCTTCAAAcgagaaaagaacaaaatcccATGATGTTTTTAGCTCAAGAATTGGATTAGAGAATGCCAAATTCTTTGACTTCCGGAGCTTCGACAAAGATAGGATAATTGCAGCAGATTCCCCCTCCAGTTCTTGGAATTTTGCATCCATGCCAGCCTCCTACACTAGTTCTCCTGTTGTTGATTTGTTTAGAAGAGAAGGGAGAGACTACTTCAGTTCTTACTCTAATAATATGTACCTCTCTGAATGCTCAAAATTTTCGGATAAATTTCTCTACAGAATTTACCCaaattcttcatcatcatcctcaAGCTTTCGGGGTTCTACCAGTACATTGGCTCTTCCCAGTTACAGGAGGGTTGTTCCAAGTAGTCCTTTTGGGTTCCTTGGCACTGCTGATGAAGGAAGAATAAAGAAGGACCTGATGAGTTTGTGTGACAACTCATCCACATTCACAAAgttgagaactttgaaggagCAAGAGCAACCAGATGAGCCTAATATTGAACACACAGAGGTTCctttcattgattttcttgGAGTGGGTGTCTCTTCCTCATA 980 0.3908 MEDSASGSAEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNSVKNHWHVIMARKQREQSKLCGKRSFQEVYNDSNFSSSNEKRTKSHDVFSSRIGLENAKFFDFRSFDKDRIIAADSPSSSWNFASMPASYTSSPVVDLFRREGRDYFSSYSNNMYLSECSKFSDKFLYRIYPNSSSSSSSFRGSTSTLALPSYRRVVPSSPFGFLGTADEGRIKKDLMSLCDNSSTFTKLRTLKEQEQPDEPNIEHTEVPFIDFLGVGVSSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02027 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Bva12g02027 326 PANTHER TRANSCRIPTION FACTOR MYB56 8 324 - -
Bva12g02027 326 Gene3D - 71 135 - -
Bva12g02027 326 CDD SANT 20 61 IPR001005 -
Bva12g02027 326 CDD SANT 71 111 IPR001005 -
Bva12g02027 326 SMART sant 16 65 IPR001005 -
Bva12g02027 326 SMART sant 68 116 IPR001005 -
Bva12g02027 326 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g02027 326 PANTHER MYB PROTEIN-RELATED 8 324 - -
Bva12g02027 326 Pfam Myb-like DNA-binding domain 20 80 - -
Bva12g02027 326 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Bva12g02027 326 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Bva12g02027 326 Gene3D - 17 68 - -
Bva12g02027 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Bva12g02027 326 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02027 Bva-Chr12 15951082 15952713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02027 15 326 MYB Transcription Factor Family AT1G17950 43.218 3.41e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02027 Myb_DNA-bind_6 2.2e-17 CL0123