Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02025 ATGCCACGGAAAGCTCAAGTCCCAGTGTCGTTCAAATTGCAAGCTTCCTTTTGTTGGGAGAACGCTTATTTGCCTCCGATGGAGCACTTGGTGAAAGAGATAGTGATGCAATCCTCGGAGGATAAAAGTGAAGATGTTTCTACTAGTAATAAGAAATGCGGCAGTTTCTTCGATGTTTATGGAGCCGAAGGCAAGGCAGAAGCTGTTTTAAAGACACCAGTAGCTAATTCAACTCTGAATCTTCAtCAGGACATTCAGGGACTAGTAACTTGGGTGCTTGCTGAAGGATTTATGCCGTCATGGGTTTTTATTAAGAATAAACCTCTTATTCCAAAAGTAGTTATGATTTACATACCAGGCTTGGATGCAGCTTTGTACTTGTCACAGTCTAAAACGCTTCCAAGTTTCAAAAGATTTTGCGGCAATCCAAGGGCAGTCTTGGCCCTTAGCTGTGTATCAGATGAAATGCACACCGTAGATGCACTCCTAACATGCAAGctgaaaagaaagagggaTGAAATTAGTTCGGACGTGAAGAAATCTGCCCTAATATCTCAGCAAGCTAGTCTTCAAGCAGAAAAAACTGGTGGTGCAGATATTCTATCATTTGTGGAGCTTACGAAAGGCATACCTTTCCCTGTTACATATCATACTCTTTCATCAAAGCAGCTGGAAGAGAATGGATATTCTTTTAATCAGCCAGGTTTCCTTTCTACCTCTCCCGCTCCCTTGGGATCTGTTCCTTATGAAATGTTGGCACTTGATTGTGAGATGTGCATAACCAGTGAAGGTTTCGAGCTTACAAGAGCTACGTTAGTGGATATCAAAGGACAGGTTGTGCTAGATAAATTGGTTAAACCATCAAATGCTATCGTTGATTACAACACCAGGTTTAGTGGAATAACACGTGAGATGTTAGATGGGGTGACGACAAATCTGAGAGACATTCAGGAAGTGTTTCTAAACCTGGTTTACAAAGAGACTATCCTTGTTGGGCATTCTATGGAAAATGATTTGTTAGCACTGAAGATCTCTCATGAACTGGTCATTGATACAGCAGTATTATACCAGCACCCCAGAGGTTCATCACATAAAACTGCTTTACGGATCCTTAccaagaaatttctttctagggAGATACAACAATCGGTGAATGGACATGACAGCATTGAAGATGCTAGAGCCACTATGGAACTGGCACTATTAAAGATCAGACATGGAAATCAAATTAACTCCTCTGACATGATATTTGCCTTGCTTCCGACAGGACCCGAATATGGTTCCCCTCCATCCTTCATGCGAAAAAAGTTCCTTAGCGTTTTGAGCGAGTCTGGGAAAACTTCCTCGTTGATTGATGATATTTCTATAGTGAAAAGATATGCCTCTGAGTCCTCTCATGCAATTCCTGTGACTTCTGATGATGAAGCCCTTGCAAAGACCAATAAGGAGgtgaaaaatgaaaaggttcACTTTGTCTGGACACAATTTtcagaattaaatttatacttaaagaAACAAGCTGAAGATTTAGAGAAATTGAATAGAAGACTAGCAGAGATGATGTCATTGCTTACATGTGGGAAGAGTGCCAAGAAAGGTAAAGGCATCAAGTTGAATGTTTCTGCTGAATTGAAGGAAATTCTAGCTCGTATGGATTCTAGAATACAGAGTCTGTATGCATCATTACCCACTAATGCCATGCTGATGATCTGCACTGGTCATGGAGACACAGCAATGGTGCACAGACTGAGGAAAATGCTTGCCGATGGGAATGAAAGTAACATATGTCGTCAGAAGACTGTGAAAATCTTGGAAGAGGTCCAGGCTCGAGCTGAATTAGGGTTGTTTTTCGTAGGTGTAAAGCATTG 1868 0.3978 MPRKAQVPVSFKLQASFCWENAYLPPMEHLVKEIVMQSSEDKSEDVSTSNKKCGSFFDVYGAEGKAEAVLKTPVANSTLNLHDIQGLVTWVLAEGFMPSWVFIKNKPLIPKVVMIYIPGLDAALYLSQSKTLPSFKRFCGNPRAVLALSCVSDEMHTVDALLTCKLKRKRDEISSDVKKSALISQQASLQAEKTGGADILSFVELTKGIPFPVTYHTLSSKQLEENGYSFNQPGFLSTSPAPLGSVPYEMLALDCEMCITSEGFELTRATLVDIKGQVVLDKLVKPSNAIVDYNTRFSGITREMLDGVTTNLRDIQEVFLNLVYKETILVGHSMENDLLALKISHELVIDTAVLYQHPRGSSHKTALRILTKKFLSREIQQSVNGHDSIEDARATMELALLKIRHGNQINSSDMIFALLPTGPEYGSPPSFMRKKFLSVLSESGKTSSLIDDISIVKRYASESSHAIPVTSDDEALAKTNKEVKNEKVHFVWTQFSELNLYLKKQAEDLEKLNRRLAEMMSLLTCGKSAKKGKGIKLNVSAELKEILARMDSRIQSLYASLPTNAMLMICTGHGDTAMVHRLRKMLADGNESNICRQKTVKILEEVQARAELGLFFVGVKH 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02025 621 PANTHER LD29573P 39 606 - -
Bva12g02025 621 SMART exoiiiendus 249 408 IPR013520 -
Bva12g02025 621 Gene3D - 247 415 IPR036397 GO:0003676
Bva12g02025 621 CDD REX1_like 251 400 IPR034922 -
Bva12g02025 621 Coils Coil 502 522 - -
Bva12g02025 621 SUPERFAMILY Ribonuclease H-like 250 402 IPR012337 -
Bva12g02025 621 Pfam Exonuclease 253 398 IPR013520 -
Bva12g02025 621 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 39 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02025 Bva-Chr12 15934350 15939424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02025 250 398 C2H2 Transcription Factor Family AT3G27970 29.518 6.22e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02025 K14570 - gmx:100802793 857.825