Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02003 ATGTCAAGCAATGCAATAACTCTTATTATCTTGTTTCTTAATATCTCCTTGTTTCCTGCTATCTCTGCTTTAAACCAGGAGGGTCTTGCACTTCTTTCATGGCTTTCAACCTTCAATTCCTCTTTTTCTGCTACTTCCTCCTTCTCCTCGTGGGATCCAACCAACAAAAATCCATGCAAATgggattttattaaatgttcCAAAGATGGGTTTGTTTCAGAGATCAGAGTAACTTCCATTAGTCTTGGTGGCAGCTTCCCCACTCAGCTGTTTTCTTTTGGCCATCTCACCACTCTTGTCATCGCAAATGCAAATCTTACTGGTGAAATTCCAGCTTCAGTAGGAAACTTGTCATCTCTGAGTACCCTGGACCTCAGCTTCAATGCTTTAACAGGGACCATACCAGCAGAAATAGGAAAGTTATCTGATCTGCAGTGGTTATCCTTGAACTCAAACTCCTTGCATGGTGGAATTCCAGCAGAAATTGGAAACTGTTCAAAGCTTCGGGAGCTGGAACTGTATGACAACCAGCTCTCTGGTAACATTCCCATAGAAATAGGCCAGCTGGGGGATCTTGAAACGTTTCGAGCAGGAGGAAACCAGGATATTCGCGGCGAAATTCCAAAGCAGATATCAAACTGTAAATCTCTGGTTTTTCTGGGTCTTGCAGATACTGGGATTTCAGGGGAGATTCCATCGAGTATAGGAGAACTTCAGAATCTTCAGACGCTTTCAGTCTATACAGCCAATCTCACAGGTCACATCCCACTTGAGATTCGTAATTGTTCGTCCTTGGAGGATTTGTTTCTATATGAAAACCAGCTTTCTGGAATTATTCCTTATGAATTGGGTTCCTTTAAAAGCCTCAGGAGAGTGTTGCTATGGCAGAATAATTTAAGTGGCGGCATTCCAGAAAGTCTGGGAAACTGCACAAGTCTGACAGTTATTGATTTTTCTCTGAATTCTTTGGAGGGAGAACTCCCATTAACTCTGAGAAATCTAGTGGTATTGGAGGAGCTTCTTCTGTCTGATAATAACATTTCTGGAGaaattccttcttttattGGCAATTTTTCAAGACTAAAGCAAGTTGAATTAGATAATAACAAATTCTCTGGTCAGATTCCATCTGTCATTGGGCAGCTGAGGGAGCTCACTCTCTTCTTTGCTTGGCAGAATGAGCTCCATGGAAGCATACCCGCGGAGCTATCCAACTGTGAGAAACTTGAAGCAATCGATCTTTCCCACAACTTCCTCACTGGGTCAATTCCAAATTCTCTCTTTCATCTAGAGAATTTAACGCAATTGTTGTTGATATCAAATCAACTTTCAGGTCAAATTCCACCAGATATTGGCAGTTGCAGCAGCTTGACCAGGTTACGCCTGGGATCGAACAAATTTACGGGTCAAATTCCATCAGAAATCGGTTTGTTAAGCAGTCTGAGCTTTCTTGAGTTGTCAGATAATCTACTTAGTGGAGAAATTCCCCATGAGATTGGGAATTGCAACCAGCTAGAAATGTTAGACTTGCACAGGAATCAGCTACAAGGAGCAATTCATTCCTCATTAGAATTCCTACTTGGTCTTAATGTTTTAGATCTTTCTGGAAATAGAATAAGTGGAAGAATTCCAGAAAATTTGGGAAAGCTTACATCTTTGAACAAGTTAATAATCAGTGGAAACCTTATCACCGGCTTGATCCCCAAGTCACTGGGCCTTTGTGGGGATTTGCAGTTGCTTGATATAAGCAACAATAGAATCACTGGTTCCATTCCAGAGGAGATCGGTCAATTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTAACAGGCCCTATTCCAGATAGCCTCTCAAATCTCTCAAAACTTTCCACCTTGGACCTTTCCCACAACCAGCTAACTGGCACCCTCAGAGTGCTTGGTAGTCTTGACAATCTAGTATCTTTGGATGTCTCCTGCAATAGTTTTTCTGGTCCTGTCCCTGATACGAAGTTCTTCCGGGATCTCCCTGCAACTGCATTTGCTGTCATCAGAATTCAAGGGGCCACATTGAGACGGAACTTTGATGAAGAAGGTGAAATGGAATGGACTTTCACTCCATTTCAAAAACTCAACTTCTCCATCAATGACATTGTCACCAAGTTAACAGATTCGAACATTGTGGGAAAGGGTTGCTCTGGAGTTGTTTATCGTGTTGAGACTCCAACGAAACAGGTTATTGCAGTAAAGAAGCTATGGCCAATAAAGAATGACGAAACTCCAGAGATAGATCTCTTCTCTGCAGAAGTTCAGACCCTGGGATCAATAAGGCATAAAAATATAGTGAGGCTTTTAGATTTTGGCCTTGCAAAACTTGTAAATCCTTCTTCACAGTCTTCAAAAGACACTGCTATGGTTGCTGGTTCTTATGGCTACATAGCTCCTGAATACGGATATAGTTTAAGAATCACAGAGAAGAGCGACGTGTATAGTTATGGTGTGATGCTCTTTGAGGTCTTAACAGGGATGGAGCCTACTGATCACAGGATTCCAGAGGGTTGCCACATTGTGACCTGGGTTAGCAGTGAAATCcgagagaggaagaaagaatttacatcaatccttgatCAGCAATTACTGTTGCAATGTGGAACACGTACACCGGAGATGCTTCAAGTGCTAGGAGTGGCTCTCCTCTGCGTTAATCCATCCCCAGAAGAAAGACCTACAATGAAAGATGTCACAGCAATGCTCAAGGAGATCAGGCATGAAAACGACGATTTGGACAAACCAAATTTCCTCCATAAAGGAGTCACCAATCCAAAAGCAGCAGTTCACTgttcaagtttctccacatcaCGTGAACCTCTAATAGaaccatcatcatcttcttcctcgtA 2888 0.4065 MSSNAITLIILFLNISLFPAISALNQEGLALLSWLSTFNSSFSATSSFSSWDPTNKNPCKWDFIKCSKDGFVSEIRVTSISLGGSFPTQLFSFGHLTTLVIANANLTGEIPASVGNLSSLSTLDLSFNALTGTIPAEIGKLSDLQWLSLNSNSLHGGIPAEIGNCSKLRELELYDNQLSGNIPIEIGQLGDLETFRAGGNQDIRGEIPKQISNCKSLVFLGLADTGISGEIPSSIGELQNLQTLSVYTANLTGHIPLEIRNCSSLEDLFLYENQLSGIIPYELGSFKSLRRVLLWQNNLSGGIPESLGNCTSLTVIDFSLNSLEGELPLTLRNLVVLEELLLSDNNISGEIPSFIGNFSRLKQVELDNNKFSGQIPSVIGQLRELTLFFAWQNELHGSIPAELSNCEKLEAIDLSHNFLTGSIPNSLFHLENLTQLLLISNQLSGQIPPDIGSCSSLTRLRLGSNKFTGQIPSEIGLLSSLSFLELSDNLLSGEIPHEIGNCNQLEMLDLHRNQLQGAIHSSLEFLLGLNVLDLSGNRISGRIPENLGKLTSLNKLIISGNLITGLIPKSLGLCGDLQLLDISNNRITGSIPEEIGQLQGLDILLNLSWNSLTGPIPDSLSNLSKLSTLDLSHNQLTGTLRVLGSLDNLVSLDVSCNSFSGPVPDTKFFRDLPATAFAVIRIQGATLRRNFDEEGEMEWTFTPFQKLNFSINDIVTKLTDSNIVGKGCSGVVYRVETPTKQVIAVKKLWPIKNDETPEIDLFSAEVQTLGSIRHKNIVRLLDFGLAKLVNPSSQSSKDTAMVAGSYGYIAPEYGYSLRITEKSDVYSYGVMLFEVLTGMEPTDHRIPEGCHIVTWVSSEIRERKKEFTSILDQQLLLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDLDKPNFLHKGVTNPKAAVHCSSFSTSREPLIEPSSSSSS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02003 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 679 781 - -
Bva12g02003 962 Pfam Protein tyrosine and serine/threonine kinase 778 913 IPR001245 GO:0004672|GO:0006468
Bva12g02003 962 Gene3D Ribonuclease Inhibitor 428 679 IPR032675 -
Bva12g02003 962 SMART LRR_typ_2 478 502 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 526 549 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 117 140 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 430 454 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 141 165 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 623 646 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 334 358 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 550 573 IPR003591 -
Bva12g02003 962 SMART LRR_typ_2 574 598 IPR003591 -
Bva12g02003 962 Pfam Leucine rich repeat 529 587 IPR001611 GO:0005515
Bva12g02003 962 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Bva12g02003 962 Gene3D Transferase(Phosphotransferase) domain 1 783 938 - -
Bva12g02003 962 PANTHER LRR RECEPTOR-LIKE KINASE 3 678 - -
Bva12g02003 962 Gene3D Ribonuclease Inhibitor 190 263 IPR032675 -
Bva12g02003 962 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Bva12g02003 962 SUPERFAMILY Protein kinase-like (PK-like) 715 948 IPR011009 -
Bva12g02003 962 PANTHER LRR RECEPTOR-LIKE KINASE 780 935 - -
Bva12g02003 962 PANTHER LRR RECEPTOR-LIKE KINASE 679 781 - -
Bva12g02003 962 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Bva12g02003 962 Pfam Leucine Rich Repeat 605 623 IPR001611 GO:0005515
Bva12g02003 962 SUPERFAMILY RNI-like 351 661 - -
Bva12g02003 962 PRINTS Leucine-rich repeat signature 120 133 - -
Bva12g02003 962 PRINTS Leucine-rich repeat signature 623 636 - -
Bva12g02003 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 678 - -
Bva12g02003 962 ProSiteProfiles Protein kinase domain profile. 529 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02003 962 Pfam Leucine rich repeat N-terminal domain 25 67 IPR013210 -
Bva12g02003 962 Gene3D Ribonuclease Inhibitor 264 427 IPR032675 -
Bva12g02003 962 SUPERFAMILY RNI-like 76 389 - -
Bva12g02003 962 ProSiteProfiles Leucine-rich repeat profile. 576 598 IPR001611 GO:0005515
Bva12g02003 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 780 935 - -
Bva12g02003 962 ProSitePatterns Protein kinases ATP-binding region signature. 724 752 IPR017441 GO:0005524
Bva12g02003 962 Gene3D Phosphorylase Kinase; domain 1 697 782 - -
Bva12g02003 962 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02003 Bva-Chr12 15828948 15832593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02003 780 951 Receptor kinase-like Gene Family AT5G56040 41.451 1.95e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva12g02003 PK_Tyr_Ser-Thr 6.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02003 - - gmx:100807225 1165.6