Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01991 ATGGAAATGATGGAACAGAGTATCCTATGCAAGTACACTGTTCATCACAGTGTGACCAAGAAAATCACAAAGCCGGTGGCAGCTAAGAAGGATTTGCAGTTGCATAATCCCGTAGAGCCCAGAGTGGTGCGGATATCCGTCACTGATCCTGATGCCACGGACTCTTCCAGCGACGAGGAAGGAGAATTCTTTGGTCGCCGGAGAGTGAAACGCTACGTCAACCAAATTGACATCGAAGCTAGCTGTAAAACTAGTGCCGTTTCCAATACCCGGAAGAGATCTGCCGGAGATGTCCAGTCCTGCCGTCGGCCACTCAAAGTTTCTTCCACCTCAAACGGTCGAAAGTTCCGAGGCGTACGACAAAGGCCTTGGGGAAAATGGGCGGCAGAGATTCGAGATCCTGCCCGCCGCATACGGCTGTGGCTGGGGACATATGACACAGCCGAGGAAGCTGCTATGGTTTATGATAATGCTGCCATTAAGCTAAGAGGTCCCGATGCTTTAACAAACTTTGTTACTCCACCGCCTAGGGAAGAGACCCAAGCGGGCGAAGCTGAAGCTGAAGTTGAAGTTGAGCAGGAAGTGAAGCCCGAAACAGTTAAGTCAGAAGCTTCTGGTTCCGGGTACGATTCGGGCGAAGAGCCTCTTCATCTACCATCTCCTACTTCAGTTCTCCAATTCCGAAGCAATTTCAACGAGGAAGTGGAAGTACAAAAGGCAgtggaaatggaagaaaaagtgtgcaaagagagagagttgGAAGCAGTTTTGGGAGAGCGGGAGTGTGAAGGGGAAACTAATTTTTTCCGTGAAAACGGGGACTATTTCCCGCTGGATGTGCCTTGTTCACCATGGCCAGTTTGGGAATATGATGTGCTGAATTTCCCAACGCCAGATTACTCGGCACTGTTCGAACAAGATCCTTCTCCGTTCTACAATGAGATTGAAGCCACGTCCATTCTAGAGGACCAAGATTTCAGTGACAATTTAACAGACTGTCACATGTCCTACTCGCCTTCCACCTTGTGCCAAGTGGACGACTACTTCCAGGACATTTTGTTAGCTTCTGATCCTCTCGTCATTCTCTG 1088 0.477 MEMMEQSILCKYTVHHSVTKKITKPVAAKKDLQLHNPVEPRVVRISVTDPDATDSSSDEEGEFFGRRRVKRYVNQIDIEASCKTSAVSNTRKRSAGDVQSCRRPLKVSSTSNGRKFRGVRQRPWGKWAAEIRDPARRIRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPREETQAGEAEAEVEVEQEVKPETVKSEASGSGYDSGEEPLHLPSPTSVLQFRSNFNEEVEVQKAVEMEEKVCKERELEAVLGERECEGETNFFRENGDYFPLDVPCSPWPVWEYDVLNFPTPDYSALFEQDPSPFYNEIEATSILEDQDFSDNLTDCHMSYSPSTLCQVDDYFQDILLASDPLVIL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01991 362 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 CDD AP2 115 171 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Bva12g01991 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 7 261 - -
Bva12g01991 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 261 - -
Bva12g01991 362 MobiDBLite consensus disorder prediction 181 199 - -
Bva12g01991 362 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
Bva12g01991 362 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Bva12g01991 362 MobiDBLite consensus disorder prediction 173 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01991 Bva-Chr12 15759007 15760879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01991 10 315 AP2-EREBP Transcription Factor Family AT4G27950 43.711 3.14e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g01991 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01991 - - lang:109327510 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01991 12 15759007 15760879 Bva12g01991 12 15759007 15760879 ECH