Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01984 ATGGATGATACTTTAACTGATATTTTTGAAGACAAAGACTTTAGTGGAGATGATCTCTTTGCTATTTTGGAGAGTCTCGAGGACTTCACTGATTTTCCTCCCATCGATGAAGCTGTTGTTAACTCAAGGGATCAGAACGAGGAAACCTCAAGGTTGGTGTCTCAGAAATCAACCTCTTCCAGTGCTGCTCAAGAATATTCTGAAACCGAGCTCGAAACTTCACCCAAGAACAAAAGACAGAAACTTGCAGCTGCCACAACTTCGTCAGAGGAACCCAACACAGATGGGCAACAAAGGATATCCCACATCACTGTGGAAAGAAACAGAAGGAAGCAAATGAACGAGCACTTGTCCGTTTTGAGGTCCCTTATGCCTTGCTTTTATGTCAAACGGGGAGACCAAGCTTCAATAATTGGAGGAGTGGTTGACTACATCAATGAGTTGCAGCAAGTTCTACATTCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGTGAAGTGCTAAGCCCTAGGATAGTTTCAAGTCCAAGACCTTTACCGCTAAGTCCTAGAAAACCACCATTGAGCCCCAGACTAAACTTGCCCATTAGTCCGAGGACTCCACAACCAGGTAGCCCTTACAGGCCCTGCAGGTTGCAACAACCAGGGCCAGGTTACCTCTCACCCAGTACCATATCCAACTCTCTTGAACCATCTCCTACATCGTCTGCTAATTCCTCCATCAATGACAATATCAACGAGCTTGTTGCCAATTCCAAGTCTGCCATCGCCGACGTAGAGGTCAAGTTTTCCGGTCCTCACGTCCTTCTAAAAACTGTATCTCCACGGATTCCCGGGCAAGCTCTGAAAATCATGTCAACTCTTGAAGAAGACCTTGCACTCGAAATCCTCCACGTGAGCATTAGCACTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAGGAACTCGCTCAACAAATCCAGCAAACATTCTGCTA 1010 0.4535 MDDTLTDIFEDKDFSGDDLFAILESLEDFTDFPPIDEAVVNSRDQNEETSRLVSQKSTSSSAAQEYSETELETSPKNKRQKLAAATTSSEEPNTDGQQRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLHSLEAKKQRKVYSEVLSPRIVSSPRPLPLSPRKPPLSPRLNLPISPRTPQPGSPYRPCRLQQPGPGYLSPSTISNSLEPSPTSSANSSINDNINELVANSKSAIADVEVKFSGPHVLLKTVSPRIPGQALKIMSTLEEDLALEILHVSISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01984 336 PANTHER - 7 336 - -
Bva12g01984 336 MobiDBLite consensus disorder prediction 39 101 - -
Bva12g01984 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 168 IPR036638 GO:0046983
Bva12g01984 336 MobiDBLite consensus disorder prediction 176 210 - -
Bva12g01984 336 SMART finulus 103 154 IPR011598 GO:0046983
Bva12g01984 336 MobiDBLite consensus disorder prediction 174 239 - -
Bva12g01984 336 MobiDBLite consensus disorder prediction 217 239 - -
Bva12g01984 336 MobiDBLite consensus disorder prediction 45 70 - -
Bva12g01984 336 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Bva12g01984 336 Gene3D - 88 162 IPR036638 GO:0046983
Bva12g01984 336 PANTHER TRANSCRIPTION FACTOR FAMA 7 336 IPR044283 GO:0003700|GO:0010052
Bva12g01984 336 CDD bHLH_AtFAMA_like 100 173 - -
Bva12g01984 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Bva12g01984 336 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01984 Bva-Chr12 15717320 15719054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01984 9 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.433 1.60e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g01984 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01984 K20558 - rcu:8274388 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01984 12 15717320 15719054 Bva12g01984 12 15717320 15719054 ECH