Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01983 ATGGGAGATCGGGATCACAAGAATCTTATAAACGAGCTGGTGCAAGGACAGGATCTGGCAAGACAGCTCCAAATCAGTCTCACTGCCCCTTCTTCGTCCCAAGAAACCCGTGAGCTTTTGATCCAGAAGATCGTGGCCACATTTGAAAAGGCACTTTCAGCAGTTTACTGGAACACGGGGTCACTGGATGAGCCACCGCAGCCCGCAGGGGTTGCAATTCGAACATCGGAGTCACCACCCTTCAGTGGTAGCCCCCGCAGTGAAGATTCTGACAAGGATTTCAGGGACCAAGATCATAGTGCCTCCAGAAAGAGAAAGGCTATGCCAAAATGGACAAGACAGATTCGAGTTGACCCTGGGATGGGAGTGGAAGGGCCACTTGATGATGGCTATAGTTGGAGAAAATATGGTCAGAAAGACATTCTTGGAGCCAAGTATCCAAGGGGTTATTATAGATGCactcataaaaattttcaaggtTGCTTGGCCACAAAGCAAGTGCAAAGATCTGATGAGGACCCCAATGTGGTTGAAATCACCTACCGTGGAAAGCACACTTGCACACAGGCATCCAATGTTAATGGAGCTTCTTCTTCACGAACTCAAGAAAATAACCAAGAACCTAACCTGAATTTGGGTGCTCAGCAGCAAAATGTGCAGCAATCACAGGAACTGCTTATGAGCCTCAGGGCAGGGCTAAGAGTCATAACAGATAACCTAGATGCTCCTTCTCAGCCATCATTTCCTCCATTCCATTTCCCTTCAACTTCAAATATAAACCCTGAAAACCAAGCATTTCCAACACCTATGATTGAAAGCAATATTGCTCAAAACTTCAATTCTCCTTCCTATATGTCCCCAGCTACTTCTGGAACAACATACTTTTCACCTGGTGGGGTGAATAACTTTGGGGCCAACCCAAATTTTGCAACTTCTACCTCTGAGATCAATGACATCATCTCAGCTACCACTTCTGCTGCAAACTCTCCCACCGTTGGATTAGACTTTCCAATTGATCATTTCCAATTTGACCAAAACTTCACATTTGATAACCGGCGATTCTTTTCCTA 1070 0.4495 MGDRDHKNLINELVQGQDLARQLQISLTAPSSSQETRELLIQKIVATFEKALSAVYWNTGSLDEPPQPAGVAIRTSESPPFSGSPRSEDSDKDFRDQDHSASRKRKAMPKWTRQIRVDPGMGVEGPLDDGYSWRKYGQKDILGAKYPRGYYRCTHKNFQGCLATKQVQRSDEDPNVVEITYRGKHTCTQASNVNGASSSRTQENNQEPNLNLGAQQQNVQQSQELLMSLRAGLRVITDNLDAPSQPSFPPFHFPSTSNINPENQAFPTPMIESNIAQNFNSPSYMSPATSGTTYFSPGGVNNFGANPNFATSTSEINDIISATTSAANSPTVGLDFPIDHFQFDQNFTFDNRRFFS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01983 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 353 - -
Bva12g01983 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 353 IPR044810 GO:0003700
Bva12g01983 356 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g01983 356 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g01983 356 MobiDBLite consensus disorder prediction 63 114 - -
Bva12g01983 356 Gene3D WRKY domain 121 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g01983 356 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g01983 356 MobiDBLite consensus disorder prediction 189 208 - -
Bva12g01983 356 Pfam WRKY DNA -binding domain 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g01983 356 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01983 Bva-Chr12 15713752 15715770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01983 7 297 WRKY Transcription Factor Family AT5G24110 39.661 1.44e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva12g01983 WRKY 5.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01983 - - gmx:100776906 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02014 02 21166103 21168542 Bva12g01983 12 15713752 15715770 ECH
Bva08g01907 08 12813091 12815407 Bva12g01983 12 15713752 15715770 ECH
Bva08g00062 08 338531 340270 Bva12g01983 12 15713752 15715770 ECH
Bva11g02207 11 17936815 17938564 Bva12g01983 12 15713752 15715770 ECH
Bva12g01983 12 15713752 15715770 Bva12g01983 12 15713752 15715770 ECH