Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01975 ATGAACTATATGTTCCTTCTCATGGTTACTTTCaagatcatCAAGAAGAAGCTTAGCAAGATACAAGAGGCAGTGGGATTCCGGCCATCACATAGTTGCAGTAAACAGAAAGTGCAATCTGTTTGGAAATCCAAGGAGGAGGCAAGTGATCATGACGGTCTTGAACGCTCTTTTTTTCTAAGAGCACTCAACTTGATTGATAATAGCGTTGCCCTTCATGATGAATCCAACCCCTCGAGCTATGCATCATGGATGATGAGACACCCATCTGCACTGCGATGTTTCGATGGATTGATGAAAGGAGCCATAGGAAAGAGGATTGTAGTTTTCTTGGACTATGATGGTACCTTATCACCCATTGTAAATGATCCTGATCGTGCATTTATGTCTGATGAGATGCGTGCAGCCGTGTGTGAAGTTGCCAAGTGTTTTCCAACGGCAATTATTAGTGGAAGAAGCAGAGATAAGgtTAAAGTATTTGTGAAGTTAAGTAATGTATATTATGCTGGGAGCCATGGGATGGATATAATGGCACCAGCGATGCCAGTTAGATCCTCTAATTCTAATGGCAAGCACTATAACAGAGCTCTTAACACAATGGATGATGGAGTTCCCTTTCAACCTGCCAAGAAGTATTTACCTGCAGTCAGAGAGATACTAACAATTCTACAGAGCAAAACAAGAGGCATACAAGGTGCAAGGGTTGAGGACAACGGTTTCTGCATCTCCGTACATTTCCGCCAGGTCCAACAAGAgAATTATGGCATATTGGAAGAGAAGGTGAAGTCTGTCCTTGAAAATTATCCAGAATTTTGCTTAAATGAGGGTAAAAAGGTTATAGAAATAAGGCCATCCATAAAGTGGAACAAAGGTCATGCCCTagaatattttcttgaaaCGCTAGGGTTAAGCAGTTCCAGCAATATCCTTCCAGTGTATATTGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGGACAGGGTTACCCAATTATAGTATCTTCAATTCCAAGGGATACACAAGCTTTGTATTCTTTGCGTGACCCATCAGAAGTACTAATTTTCTTGTCAAGGCTGGCGAAAATCTCTAGCTCAAAATG 1115 0.4054 MNYMFLLMVTFKIIKKKLSKIQEAVGFRPSHSCSKQKVQSVWKSKEEASDHDGLERSFFLRALNLIDNSVALHDESNPSSYASWMMRHPSALRCFDGLMKGAIGKRIVVFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVAKCFPTAIISGRSRDKVKVFVKLSNVYYAGSHGMDIMAPAMPVRSSNSNGKHYNRALNTMDDGVPFQPAKKYLPAVREILTILQSKTRGIQGARVEDNGFCISVHFRQVQQENYGILEEKVKSVLENYPEFCLNEGKKVIEIRPSIKWNKGHALEYFLETLGLSSSSNILPVYIGDDRTDEDAFKVIQSRGQGYPIIVSSIPRDTQALYSLRDPSEVLIFLSRLAKISSSK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01975 371 CDD HAD_TPP 108 357 - -
Bva12g01975 371 Pfam Trehalose-phosphatase 110 355 IPR003337 GO:0003824|GO:0005992
Bva12g01975 371 Gene3D - 109 351 IPR023214 -
Bva12g01975 371 SUPERFAMILY HAD-like 108 366 IPR036412 -
Bva12g01975 371 TIGRFAM T6PP: trehalose-phosphatase 104 366 IPR003337 GO:0003824|GO:0005992
Bva12g01975 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 370 - -
Bva12g01975 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 370 IPR044651 GO:0004805|GO:0005992
Bva12g01975 371 Gene3D - 188 285 - -
Bva12g01975 371 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 109 328 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01975 Bva-Chr12 15643573 15651140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01975 105 370 Trehalose Biosynthesis Gene Families AT1G23870 25.532 3.31e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01975 K01087 - gmx:100809194 501.901