Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01973 ATGATGGTTGATACAGGTGCTATGTCAAGAGCGGGACCCATTGTTGATAGGTTGCCAGAGAAAGATGATGATGGTGGGTTTGCCAGTGGAGGGTGGAAAAGTGAAGATGGAAGACTTAGCTGTGGACATTCAAGTTTTAGGGGAAAGAGAGTGACGATGGAGGATTTCTATGATATTAAGACAACAAAGGTAGATGACCGAACAGTATGCTTATTTGGAATATTTGATGGCCATGGTGGTTCTCGTGCTGCTGAGTACTTGAAGGAGCATCTCTTTGATAATCTCATGAAGCATCCAAAGTTTTTGGCAGATACCAAATTGGCTCTAAGTGAAACATATCAACAGACCGATGCCAATTTTCTGGATTCTGAAAGAGATACTTTTCGGGATGATGGTTCTACAGCTGCAACGGCAGTTTTAGTTGATAACCATCTCTATGTTGCCAATGTTGGAGATTCTAGGACTATAATATCCAAAGGTGGTAAAGCAATTGCTCTCTCAGAGGATCACAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGctgGTACTTGGAGGGTTGGAGGAGTTCTAGCAATGTCGCGTGCTTTCGGTAACCGTATGTTAAAGCAGTTTGTTGTGGCAGAACCTGAGATCCAGGATCAGGAGATAGATGAAGAACTTGAACTACTTGTGCTTGCAAGCGATGGGTTATGGGATGTTGTACCAAATGACGATGCCATTTCCCTTGCACGCGCGGAAGAAGAGCCGGAAGCAGCTGCTCGTAAATTAACAGAAGCAGCTTTCACACGTGGTAGTGCGGATAACATTACATGCATTGTGGTGCGATTCCATCATGACAAAGCCAACCCAGCAAATCCTGACAAAGCAGCAGATCCAGCTAGTGTCCAGCATGGATA 926 0.4449 MMVDTGAMSRAGPIVDRLPEKDDDGGFASGGWKSEDGRLSCGHSSFRGKRVTMEDFYDIKTTKVDDRTVCLFGIFDGHGGSRAAEYLKEHLFDNLMKHPKFLADTKLALSETYQQTDANFLDSERDTFRDDGSTAATAVLVDNHLYVANVGDSRTIISKGGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEIDEELELLVLASDGLWDVVPNDDAISLARAEEEPEAAARKLTEAAFTRGSADNITCIVVRFHHDKANPANPDKAADPASVQHG 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01973 308 SMART PP2C_SIG_2 22 286 IPR001932 -
Bva12g01973 308 MobiDBLite consensus disorder prediction 1 30 - -
Bva12g01973 308 CDD PP2Cc 40 286 IPR001932 -
Bva12g01973 308 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Bva12g01973 308 SMART PP2C_4 30 284 IPR001932 -
Bva12g01973 308 MobiDBLite consensus disorder prediction 15 29 - -
Bva12g01973 308 SUPERFAMILY PP2C-like 37 287 IPR036457 -
Bva12g01973 308 ProSiteProfiles PPM-type phosphatase domain profile. 40 286 IPR001932 -
Bva12g01973 308 Pfam Protein phosphatase 2C 42 279 IPR001932 -
Bva12g01973 308 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 10 294 - -
Bva12g01973 308 PANTHER ALPHABET, ISOFORM E-RELATED 10 294 - -
Bva12g01973 308 Gene3D - 31 306 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01973 Bva-Chr12 15629786 15635275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01973 1 290 PP2C-type Phosphatase Gene Family AT5G53140 79.310 3.14e-176 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01973 K17506 - gmx:100813138 525.398