Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01971 ATGAATATTCAGCAAGAGAAGTTTGTCAGGTTCCAGGACTGGAATTCGGAGAAGAGTTCTGAGAGCCAATATCCTGCATACAACTTTGCACATTCAGGGAGAATTAGAACTACTCTTAGTTCAGTTTCCGAGAAGTTTCAGAGAGGCATGGAATCTGGTTCTGAGAGGATAAAGAGATTCAGGACATCTTTCAAATCTTTCCCCTATAAAAGTGTTCTGGCTAGAAGCTTCGGTTCTAGAAAGAAAATCCTTGATCCTCAGGGTCCATTCCTTCAAAAGTGGAACAAGATATTTGTATTGTCATGTGTTATTGCTGTATCACTAGACCCTTTGTTCTTATATGTCCCTGTGATTAATGATGAGAAGAAATGTCTTTCATTGGACAAGAAGATGCAGACTGTGGCAACTGTTTTAAGATCATTCTCTGATATCTTTCATATAATCCACATAATTTTCCAATTTCGAACTGGATTCATTGCTCCATCTTCACGTGTATTTGGAAGAGGTGTTCTGGTTGAAGATTCTTGGGCAATAGCAAAGAGGTATCTGTCATCATACTTCCTAATAGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGGTTCTAATTGTCATTCCGAAGATGAGAGGCTTTACATCACTGAATACGAAGAACTTGctgaaatttattgttttcttccaATACATTCCAAGGTTTTTACGAATTGTTCCATTATATAAAGAAGTTACAAGGACATCTGGCATCCTCACTGAAACTGCTTGGGCAGGAGCTGCATTTAATCTCATACTTTACATGCTTGCAAGCCATGTTATTGGTGCCTTTTGGTACTTGTTTTCAATTGAGAGAGAAACCACATGCTGGCAAGATTCCTGTCCAAAAAATGCTACCTGTAACAAGGCATATCTGTATTGTAGTGATCATCGAGGGCCAGGCACGGCTGTAGCATTCTTGAATTCTTCTTGCCCAATACAGAGTGAAGACGCAACTATCTATGATTTTGGAATATTCCTTGATGCTCTTCAATCTGGTGTTGTGGAGTCAACAGATTTCCCAGAGAAGTTGTTCTACTGTTTTTGGTGGGGTCTTAGAAATCTGAGTTCTCTTGGTCAGAATCTGCAAACTAGTACCTATGTTTGGGAAATTTGCTTTGCGGTTTTCATTTCCATCGCTGGTTtggtattattttcatttctcatcGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTAGAGGAGATGAGGGTGAAAAGGAGAGATGCGGAACAGTGGATGTCTCATCGGTTGCTCCCTGAAAGTCTGAGGGAGCGGATCAGACGACATGAACAATACAAATGGCAAGAAACCAGAGGTGTTGATGAGGACAATTTGATCCGTAATCTTCCAAAGGACTTAAGAAGGGACATCAAGCGTCACCTTTGCTTAGCGCTGCTGATGAGAGTGCCAATGTTTgagaaaatggatgaacaaCTCAAGCAGCTCCGCCACACTTTCAGGTTCTACTCTCAACAATGGCGTACGTGGGCTGCATGTTTTATTCAAGCAGCGTGGCGCCGCTATAGTAAGAAGAAGCTTGAAGAATCTCTgagagaagaggaaaataGGCTGCAAGATGCATTGGCCAAGGCAGGTGGTAGCTCACCAAGTTTAGGTGCCACAATATATGCCTCAAGATTTGCTGCTAATGCTCTTAGAGCTTTACGCCGGAATGGCACACGCAAGACAAGGGTGCCTGAGAGAATACCCCCAATGCTGCTTCAGAAGCCTGCAGAACCCGATTTTACTTCGGAAGagcaata 1808 0.4054 MNIQQEKFVRFQDWNSEKSSESQYPAYNFAHSGRIRTTLSSVSEKFQRGMESGSERIKRFRTSFKSFPYKSVLARSFGSRKKILDPQGPFLQKWNKIFVLSCVIAVSLDPLFLYVPVINDEKKCLSLDKKMQTVATVLRSFSDIFHIIHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFLIDILAVLPLPQVVVLIVIPKMRGFTSLNTKNLLKFIVFFQYIPRFLRIVPLYKEVTRTSGILTETAWAGAAFNLILYMLASHVIGAFWYLFSIERETTCWQDSCPKNATCNKAYLYCSDHRGPGTAVAFLNSSCPIQSEDATIYDFGIFLDALQSGVVESTDFPEKLFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPESLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKTRVPERIPPMLLQKPAEPDFTSEEQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01971 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 495 600 - -
Bva12g01971 602 Gene3D Helix hairpin bin 412 477 - -
Bva12g01971 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 495 600 - -
Bva12g01971 602 Gene3D - 97 410 - -
Bva12g01971 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 494 - -
Bva12g01971 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 494 - -
Bva12g01971 602 SUPERFAMILY Voltage-gated potassium channels 85 408 - -
Bva12g01971 602 Pfam Ion transport protein 94 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva12g01971 602 SUPERFAMILY cAMP-binding domain-like 415 496 IPR018490 -
Bva12g01971 602 Coils Coil 525 545 - -
Bva12g01971 602 MobiDBLite consensus disorder prediction 574 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01971 Bva-Chr12 15617385 15622554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01971 495 601 Ion Channels AT5G53130 83.486 2.60e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01971 K05391 - gmx:100817516 828.55