Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01965 ATGAATCAGCTGATAATCCAATTCCCGTTTCGGATACGGGGCCAGCAGCCTAAGACATGCGGCTATCCGGGTTTTAGTGTATCCTGTAGTAAAGAAGGGCAAACGCTCCTCAAGCTTCCTTATTCTGGTGAGTTCAGTATCCAAGGAATAGACTATTCCTTTCAGGAATTATGGGTGAATGACCCCGACAACTGCCTCCCGAAACGAATTCTCTCTCTTAACCTTTCTGGGTCTCCTTTCGATGCCGTTTACTATCAAGAATTTGTCTTCTTTAACTGCTCCGGGGATTATCGGAGCTATCGTTTTAACCCAATAGCTTGCCTCAGTGGCTCCAATTACACCGTTTTTGCTTCGTCTTCGATGAGTGTGGTTATGCACTTGTCGGCAGTTTGCAATCTAATCAGGAGAGTTAAGGTGCCTGTTCAGTGGCCGTTTTACGATGAGATATTGTCGTCTGACCTGAGCGACAACCTACTCCTGTCGTGGGATTCGCCGACGTGTGGGAGGTGTGAGTCACAGGGTGGCCAGTGTGGGTTTAAGACTAATTCCAGTCTTGAAATTGCCTGTTACAATGCTTCCTCCAAAGGGATTTCGCGGGGTGCACGTTATGCGATCACCGTGGGCCTGGGAGTACCGGCGGTGTTGTGCCTTATTGGGCTGTTGTGGTGCATTTGTGGCAGGTTAAGGGCCCGTTATTGGGCCAGAGAGACAGTTGCAGATGTCAACTCCCTTATTGGGTCACAGCCTAGAATTTTCGCAGGCCTTGATGGGCCTACGATTGAGTCATACCCAAAAATTGTGCTTGGGGAGAGCAGACGCTTACCCAAGCCGGATGATAATACGTGCCCTATATGCCTGTCGGAATATGCGCCCAAAGAGACCCTCAAGAGCATACCTGAATGTCAACATTGCTTCCATGCTGAGTGCATTGATGAATGGCTTCGGTTGAATGCTTCTTGCCCAATTTGCCGGACTTCTCCTCCCAAGTTAACGCCGGCGGTTAATCCCTCATCAACATA 1019 0.4907 MNQLIIQFPFRIRGQQPKTCGYPGFSVSCSKEGQTLLKLPYSGEFSIQGIDYSFQELWVNDPDNCLPKRILSLNLSGSPFDAVYYQEFVFFNCSGDYRSYRFNPIACLSGSNYTVFASSSMSVVMHLSAVCNLIRRVKVPVQWPFYDEILSSDLSDNLLLSWDSPTCGRCESQGGQCGFKTNSSLEIACYNASSKGISRGARYAITVGLGVPAVLCLIGLLWCICGRLRARYWARETVADVNSLIGSQPRIFAGLDGPTIESYPKIVLGESRRLPKPDDNTCPICLSEYAPKETLKSIPECQHCFHAECIDEWLRLNASCPICRTSPPKLTPAVNPSST 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01965 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 333 - -
Bva12g01965 339 Pfam Wall-associated receptor kinase galacturonan-binding 5 61 IPR025287 GO:0030247
Bva12g01965 339 Pfam Wall-associated receptor kinase C-terminal 135 192 IPR032872 -
Bva12g01965 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 333 - -
Bva12g01965 339 SMART ring_2 282 323 IPR001841 -
Bva12g01965 339 CDD RING-H2_EL5_like 281 324 - -
Bva12g01965 339 ProSiteProfiles Zinc finger RING-type profile. 282 324 IPR001841 -
Bva12g01965 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 329 IPR013083 -
Bva12g01965 339 SUPERFAMILY RING/U-box 274 331 - -
Bva12g01965 339 Pfam Ring finger domain 280 324 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01965 Bva-Chr12 15591532 15593583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01965 2 334 C3H Transcription Factor Family AT2G46495 37.463 1.85e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01965 - - tcc:18605739 446.047