Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01959 ATGATAATCAAGCGCAACCTGAAATCCCAAATGCCGAGTCTGAAACGTTGCAAACTCGGTGACTCGGTCGGGGATGACGATGATTACTCTGCGGCTCGGAAGAAGAGGAGGACAAACGGGTATTACCCTCTGAATCTTCTTGGCGATGTCGCTGCTGGTATAATTCCTTTGAGCTTTCATGGTTTGCTGAGTGCTGGTGTATCTGAGAAGGGCTTTTCTGCATCGTGGTGCACCGAAGTCTCGTGCTCCCATGGTGAAGTGGAGTCAAAGTCCAAGGGTGAGAATTCTGTCCGAACAAAGATGAATAGGCCTGCAGAGGTTTCACGGCCACCGCTTGTGAGGACGTCAAGAGGTAGAGTTCAGGTACTCCCTTCACGTTTCAACGATTCCGTTATCGagaattggaagaaagagACAAAGACTAGCGTGCGTGATGACAGTTTCGATGAGGAATTTGAATGTAAAAAGGAGAATTTTGGTTTTAAGACACCGAAAGCATACAAACAGAATACAAAGAAAGGGAgaaatgatgagaaaaatGGGTACAAGTCTCGCAAATACCGGACATTGTGTGAAGAGAAGGCAAGAGAGGATGTGCGTGTACCGtataagaattttgatatCAGGAAGTATTCAACTCCGCGTACTACACTGGCCTCAAAGCGTGAGCAATCAGTTGAAGATGAGAAAGGCCGATTTGTAGATATAGGGGAAGATGATTTAATCAGCAATGAGATGTTTTCGAAGAAGaatgacaagaaaaaagatggaCTATATGGACCCGAAGACTTCTATGCAGGTGATATAGTGTGGGCCAAAGCAGGGAAAAGAGAGCCTTTTTGGCCAGCCATTGTCATTGATCCAATGTCTCAGGCACCTGAGCTGGTTCTGAGGTCTTGTATAGCGGATGCCGCTTGTGTGATGTTTCTAGGGTACGCTGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATAGATCATGTAGACAGGTTTCAGGGGCAGCCCGAATTGAGTTACTATAACTCCTCTGATTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGATTTACTGAGAAGTTGATTGCAGATATAAATACAGCAGCTGGTAACACAGGTTATGATGAAACTATTCTAAAAAGCTTTCTGGAGGCCACTGGTTCAAACCAAGACGCAGGTTATCACATTCTGAATCAGGATCTATTTGATAGGAAGAAAGACATGCGACCCTGCGAAGCCTGTGGAATGGACCTTCCTTTCAAAGtgtcaaagaaaatgaaggattCAGCACCTGGTGGCCAATTTCTATGTAAAACATGTGCTAGGttaataaaatcaaaacattatTGTGGCATATGCAAGAAAATTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGATGTGATGGATGTAAGGTGTGGGTGCATGCCGAATGTGACAAAATTTCCAGCAAtcattttaagAATCTTGGAGGCACTGATTATTACTGCCCAACTTGCAAAGCGAAGTTTGATTTTGAGTTGTCTGATTCGGAAAAATCACAGCCAAAAGTCAAATGGAACAAAAACAGTGGGCAGAACAATGGGAACAAAAACAGTAGGCAGAACAATGGGCAGCTAGTGCTGCCCAACAAAGTCACTGTTCTCTGCAATGGTGTGGAGGGTGTATATTTTCCAAGCCTTCACTTaGTTGTGTGCAAGTGTGGATTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGGCACACCGGTTCCAAGTCAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTGCTACTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCCACTGCCGTAGTTTCTGTCAAACCTAAAAAGccttctttaaaagaaaggaagcaaAAGTTGCTAACATTTTTGCAAGAGAAGTATGAACCTGTTTATGCAAAGTGGACAACAGAACGATGTGCTGTGTGTAGATGGGTTGAAGATTGGGACTacaacaaaattatcatttgCAATAGatgcCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGATTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGAAATCAAGCGTGAGTGTTGTCTTTGTCCTGTCAAAGGTGGAGCTCTGAAGCCAACTGATGTTGACACTTTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCCTTTGCTAGTGATGAAAAGATGGAGCCTGCTCTGGGTATTCTGAGCATTCCGTCAAATTCTTTTGTGAAGATTTGTGTAATTTGTAAGCAAATTCATGGTTCTTGTACACAATGTTGCAAGTGCTCTACTTATTTCCATGCCATGTGTGCATCAAGAGCAGGGTATCGCATGGAGCTGCATTGCTTGGAGAAAAATGGTAGACAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGATACTGTTTTGATCATACAAACCCCTCTCGGGGTTATTTCAGCCAAAAGCCTTctccaaaataagaaaaaatctgGGTCTAGGTTAATTTCATCCAAAAGAACAAAGCCAGAAGATACTCCTCCTGTAGATAACGCTGCGGAAGAGCCATTCTCCGCTGCTAGGTGCCGCATCTTTCAAAGAACGAATCCTAGTAAAAAGAGAGCAGCAGACGAAGCCTTTCCTCATCGGGCGAAGGGTCACTTCCATCATCCTTTAGATGCAATCCGGAGTTTAAATGCTTACAGAGTGATACGGGAAGAACCTCAGacgttttcttcttttagagAACGTCTTAACCACTTAcagAGAACCGAAAATGAGCGGGTTTGCTTTGGGAGGTCAGGCATACACGGATGGGGCCTTTTTGCGCGTAGGAATATTCAAGAAGGAGAAATGGTTCTCGAATATCGCGGGGAACAAGTGAGACGCAGCATCGCAGATCTGAGGGAGGCACAGTACAGATCACAAGGCAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTGGTCGATGCCACCGACAAAGGAAATATAGCACGGCTAATCAACCATTCTTGTGCTCCGAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACTAACGTATCCGCCGGTGATGAACTAACGTATGATTACTTGTTTGATCCAGACGAGCCCGATGAATTTAAAGTCCCTTGTTTATGTAAAGCTCCGACTTGCCGAAAATTCATGAATTG 3302 0.4179 MIIKRNLKSQMPSLKRCKLGDSVGDDDDYSAARKKRRTNGYYPLNLLGDVAAGIIPLSFHGLLSAGVSEKGFSASWCTEVSCSHGEVESKSKGENSVRTKMNRPAEVSRPPLVRTSRGRVQVLPSRFNDSVIENWKKETKTSVRDDSFDEEFECKKENFGFKTPKAYKQNTKKGRNDEKNGYKSRKYRTLCEEKAREDVRVPYKNFDIRKYSTPRTTLASKREQSVEDEKGRFVDIGEDDLISNEMFSKKNDKKKDGLYGPEDFYAGDIVWAKAGKREPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFIDHVDRFQGQPELSYYNSSDFQMAIEEAFLADQGFTEKLIADINTAAGNTGYDETILKSFLEATGSNQDAGYHILNQDLFDRKKDMRPCEACGMDLPFKVSKKMKDSAPGGQFLCKTCARLIKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNHFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNSGQNNGNKNSRQNNGQLVLPNKVTVLCNGVEGVYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSIRVKDSMLLLEQWMLQLAEFHATAVVSVKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIIQTPLGVISAKSLLQNKKKSGSRLISSKRTKPEDTPPVDNAAEEPFSAARCRIFQRTNPSKKRAADEAFPHRAKGHFHHPLDAIRSLNAYRVIREEPQTFSSFRERLNHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREAQYRSQGKDCYLFKISEEVVVDATDKGNIARLINHSCAPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPTCRKFMN 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01959 1100 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1100 - -
Bva12g01959 1100 ProSiteProfiles Zinc finger PHD-type profile. 457 513 IPR019787 -
Bva12g01959 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 716 835 IPR013083 -
Bva12g01959 1100 ProSiteProfiles PWWP domain profile. 266 335 IPR000313 -
Bva12g01959 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 715 IPR013083 -
Bva12g01959 1100 MobiDBLite consensus disorder prediction 525 548 - -
Bva12g01959 1100 Gene3D SET domain 881 1100 IPR046341 -
Bva12g01959 1100 CDD SET_SETD1-like 945 1096 - -
Bva12g01959 1100 SUPERFAMILY FYVE/PHD zinc finger 665 729 IPR011011 -
Bva12g01959 1100 SMART PHD_3 666 713 IPR001965 -
Bva12g01959 1100 SMART PHD_3 459 511 IPR001965 -
Bva12g01959 1100 SMART PHD_3 777 833 IPR001965 -
Bva12g01959 1100 CDD ePHD_ATX3_4_5_like 721 832 IPR041955 -
Bva12g01959 1100 Pfam PHD-finger 679 713 - -
Bva12g01959 1100 ProSiteProfiles Post-SET domain profile. 1084 1100 IPR003616 -
Bva12g01959 1100 MobiDBLite consensus disorder prediction 861 882 - -
Bva12g01959 1100 CDD PHD_TCF19_like 460 510 - -
Bva12g01959 1100 PANTHER PHD FINGER PROTEINS 1 1100 - -
Bva12g01959 1100 SUPERFAMILY FYVE/PHD zinc finger 458 514 IPR011011 -
Bva12g01959 1100 SUPERFAMILY SET domain 951 1097 IPR046341 -
Bva12g01959 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 515 IPR013083 -
Bva12g01959 1100 ProSiteProfiles Zinc finger PHD-type profile. 664 715 IPR019787 -
Bva12g01959 1100 ProSiteProfiles SET domain profile. 958 1075 IPR001214 GO:0005515
Bva12g01959 1100 MobiDBLite consensus disorder prediction 528 548 - -
Bva12g01959 1100 CDD PHD_ATX3_4_5_like 666 712 IPR042011 -
Bva12g01959 1100 Gene3D - 261 367 - -
Bva12g01959 1100 SUPERFAMILY Tudor/PWWP/MBT 259 363 - -
Bva12g01959 1100 SMART set_7 958 1081 IPR001214 GO:0005515
Bva12g01959 1100 Pfam PHD-zinc-finger like domain 720 832 - -
Bva12g01959 1100 Pfam PWWP domain 267 360 IPR000313 -
Bva12g01959 1100 ProSitePatterns Zinc finger PHD-type signature. 667 712 IPR019786 -
Bva12g01959 1100 Pfam SET domain 969 1074 IPR001214 GO:0005515
Bva12g01959 1100 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1100 IPR025780 -
Bva12g01959 1100 Pfam PHD-finger 459 512 IPR019787 -
Bva12g01959 1100 ProSiteProfiles Extended PHD (ePHD) domain profile. 718 833 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01959 Bva-Chr12 15539828 15548259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01959 667 832 C2H2 Transcription Factor Family AT3G14740 32.948 9.97e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva12g01959 zf-HC5HC2H_2 2.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01959 - - aprc:113853254 1860.88