Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01958 ATGTATGCAGAGACGGGTCTTCTGTTCCCTTATCTTCAGAATTTCTCTCAGGAGCTTCAACAACTCGAGGAGTACTGCACAACCCAGAAGCCCAATGTTTCAATGGGTGACCTCATTCAGTCTTCTGCCATATCGGAGTATGATTTGGGAGCAGAGGGTGATCTGTTCAAGGCTCCTGAACCAATAATTGAAGAACCAATCATGGACATCGATCCCATGACTGCAGCCATCTCAATGATATCTTGCGGGGAGGACGTAATCTCCTCTCAGGGACTAAGATCCACAGATATTGACTCTCTTCAAAATGAGCAGCTTCTGAGCGATGTATTCTATGAGTGCAAGAAGGATCTTCTAGAGAAGGCAGCAATAGATACACCTCTCTCTGAGATTCTCGATATCAAGGTCCCAGCGCTGAAGATAGATGGTAACCAAATTCAAGGAAACAAATCACTTCCTGACATTCCATTACCAAAAAGTATTAGTTCAGAATGTTTGAGCTCAATGGACTGGATTCATGGAGCTGCAGTGAAACCTGcttttcttgattttcctGGACTAGATTTGACTGCAGTTTATGGCATGCGGAGGGCATTCAGTGAAGGAGATATTAAGACTCTTGGTAATAGCAATATGAGCCTCGTCCAATCTCCCCATGAAAGGCCCTTTGTTATCAGCAACTGCACTAGTGAGGAACGCCGTGAAAAGCTGTCCAGATATAGGAATAAGAAGACGAAGAGGAACTTTGGCAGAAAAATCAAGTACGCTTGCAGGAAGGCTCTTGCCGACAGTCAACCAAGAATCCGTGGAAGATTTGCCAAGACTGAAGATTCTGATGTCAAGAGGCAATA 848 0.4375 MYAETGLLFPYLQNFSQELQQLEEYCTTQKPNVSMGDLIQSSAISEYDLGAEGDLFKAPEPIIEEPIMDIDPMTAAISMISCGEDVISSQGLRSTDIDSLQNEQLLSDVFYECKKDLLEKAAIDTPLSEILDIKVPALKIDGNQIQGNKSLPDIPLPKSISSECLSSMDWIHGAAVKPAFLDFPGLDLTAVYGMRRAFSEGDIKTLGNSNMSLVQSPHERPFVISNCTSEERREKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEDSDVKRQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01958 282 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Bva12g01958 282 Pfam CCT motif 232 274 IPR010402 GO:0005515
Bva12g01958 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 280 - -
Bva12g01958 282 PANTHER CCT MOTIF FAMILY PROTEIN 26 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01958 Bva-Chr12 15532697 15536683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01958 213 277 C2C2-CO-like Transcription Factor Family AT3G21880 44.615 1.20e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g01958 CCT 7.5e-17 CL0281