Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01955 ATGGACTATGGCAGGCTCGAGCCGGATGGATCTTCCCGGCGGTCCACCCTAACAGATGTTGCCAAACCTCCCAAGAAGAATTCCAAGAGAGCTATCATTTTGTCAGTCATTGCCCTTGGTTTAATTGTTGCCTCCGCCGTCTCTGCGGCCGTCGTGCTCACCAGCCGCACACGTGGACGTGGTCCGGTTCAAAATGGGCCGGGCATCCCAAAGCCCACTCAGGCAATTTCCCAGACCTGCAGCAAAACCCGGTTCCCATCACTCTGCGTCAACTCACTTCTTGACTTCCCGGGATCAACCAACGCCTCGGAGCAAGACCTGGTCCACATTTCCTTTAACATGACCCTCCAGCACTTTAGCAAAGCCCTCTACTCCTCTACCGGGATCTCCTACGCCCAGATGGATCAATATGTACGGTCGGCGTACGAGGACTGCCTCGAGCTCCTTGAGGACTCCGTGGACGCGCTCTCACGCTCCCTCACCTCCGTCGCGCCATTGGATGGGGGCAACAACCCCGGTGGGTCCACGCAGGACGTGCTGACGTGGCTCAGTGCCGCCCTCACGAATCAAGACACGTGTGCCGAGGGGTTTTCGGACATAAGCGGGACCGTCAAAGATCAGATGACCAATAATTTGAAGGACTTGTCAGAACTCGTGAGCAATTGCCTGGCGATTTTCTCGGGGAGTGGCGGCGACGACTTTGCCGGGGTTCCCATACAGAACAGGAGAAGACTAATGGGAGAGAATGTCGATATGTCGGACGATATTTCTGGTGATTTCCCGAAATGGTTAAGTAAAAGAGACAGGAAATTGCTGGGTTTACCGGCTTCCGCGATACAAGCCGATATAGTCGTGTCCAAAGACGGGAATGGATCGGTGAAGACCATCGCAGAGGCTATTAAAAAAGCACCCGAGCACGGTACCCGCCGGTTCGTTATCTACGTGAGGGCAGGAAGGTACGAAGAGAATAATTTAAAGGTGGGGCGAAAGAAAACCAACATCATGTTCATAGGTGATGGGAAGGGTAGGACGGTCATTACAGGCGGAAAAAGTGTTCAGGAGAAGCTGACGACTTTCCATACGGCATCCTTCGCTGCAACTGGAGCTGGCTTCATTGCTCGGGACATGACCTTCGAAAACTACGCCGGGCCGGGGAAACATCAAGCGGTGGCCCTCCGTGTCGGAGCCGACCATGCGGTGGTGTACCGCTGCAACATCATCGGATACCAAGACACATGCTATGTCCACTCCAACCGACAGTTCTTCCGCGAATGTGACATTTATGGAACCGTAGATTTCATATTTGGCAATGCAGCTGTGGTTTTCCAGAATTGTTCCCTTTATGCCCGAAAGCCCATGCCCATGCAAAGGAACACCGTCACAGCCCAAAACAGAAAGGACCCGAATCAGAACACGGGTATATCCATCCACCATTGCCGGATCCTGGCTGCCCCTGATCTCCAGGCATCAAAGGGAAGCTTCCAAACATATCTTGGCCGTCCATGGAAACTATATTCTAGAACCGTGTACATGTTATCATTCATGGGTGATCACATACATCCACGTGGATGGCTGGAGTGGAATGGAGCATTTGCCTTAGATACCTTATACTATGGTGAGTACATGAATTACGGGCCGGGTGCAGCCGTTGGGCAACGGGTCAAATGGCCGGGTCATCGGGTCATAACGTCCATGGTGGAGGCGAACAGATTCACGGTGGCTTCATTCATATCAGGTACGGCATGGTTGCCGTCAACTGGAGTGGCATTTTTGGCCGGTTTATG 1784 0.5303 MDYGRLEPDGSSRRSTLTDVAKPPKKNSKRAIILSVIALGLIVASAVSAAVVLTSRTRGRGPVQNGPGIPKPTQAISQTCSKTRFPSLCVNSLLDFPGSTNASEQDLVHISFNMTLQHFSKALYSSTGISYAQMDQYVRSAYEDCLELLEDSVDALSRSLTSVAPLDGGNNPGGSTQDVLTWLSAALTNQDTCAEGFSDISGTVKDQMTNNLKDLSELVSNCLAIFSGSGGDDFAGVPIQNRRRLMGENVDMSDDISGDFPKWLSKRDRKLLGLPASAIQADIVVSKDGNGSVKTIAEAIKKAPEHGTRRFVIYVRAGRYEENNLKVGRKKTNIMFIGDGKGRTVITGGKSVQEKLTTFHTASFAATGAGFIARDMTFENYAGPGKHQAVALRVGADHAVVYRCNIIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPMQRNTVTAQNRKDPNQNTGISIHHCRILAAPDLQASKGSFQTYLGRPWKLYSRTVYMLSFMGDHIHPRGWLEWNGAFALDTLYYGEYMNYGPGAAVGQRVKWPGHRVITSMVEANRFTVASFISGTAWLPSTGVAFLAGL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01955 594 Pfam Plant invertase/pectin methylesterase inhibitor 75 225 IPR006501 GO:0004857
Bva12g01955 594 SUPERFAMILY Pectin lyase-like 277 593 IPR011050 -
Bva12g01955 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 70 226 IPR006501 GO:0004857
Bva12g01955 594 SMART PMEI_2 71 225 IPR006501 GO:0004857
Bva12g01955 594 PANTHER PECTINESTERASE 24 593 - -
Bva12g01955 594 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g01955 594 PANTHER PECTINESTERASE 24 593 - -
Bva12g01955 594 CDD PMEI-like_3 80 227 - -
Bva12g01955 594 Pfam Pectinesterase 282 579 IPR000070 GO:0030599|GO:0042545
Bva12g01955 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 227 IPR035513 -
Bva12g01955 594 Gene3D - 276 594 IPR012334 -
Bva12g01955 594 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Bva12g01955 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 228 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01955 Bva-Chr12 15506926 15510724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01955 1 594 Carbohydrate Esterase AT5G53370 65.217 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01955 - - zju:107414790 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01955 12 15506926 15510724 Bva12g01955 12 15506926 15510724 ECH