Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01951 ATGGACTTGGACAGCATTGAGTGTGTTTCATCCTCGGATGGCATGGATGAAGATGAGATCCAACACCATAGTCTGCATCCTCATCCCCATCATCACTCGGCGTTTTCCTCCGCTAAACCTCGCAACGGAGGCACCAACAACAATATTATGGGTCCCACGGCCATTGCTCCGGCAACCAGTGTCCATGAGTTGCTGGAATGCCCTGTCTGTACCAATTCCATGTACCCACCAATTCATCAGTGCCATAATGGGCATACACTGTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCTACATGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCATTAGAAAAGGTGGCTGAGTCGCTTGAGTTGCCTTGTAAATACTTCTCCCTTGGATGTCCAGAGATCTTCCCATACTACAGCAAGCTTAAGCATGAGGCAGTATGCAATTTCAGGCCATACAATTGCCCTTATGCTGGATCAGAGTGTGCTGTTGTTGGGGATATTCCTTTCCTGGTTGCACATCTGAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCCAATCCCCGTGAAGTAGAGAACGCAACTTGGATGCTCACaGTATTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCAGTATACATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAAGCTCGGAACTATAGCTATAGCCTAGAGGTTGGAGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCACGAAGTGTTCGAGATAGTCACCGCAAAGTGAGGGATAGTCATGACGGTCTCATTATTCAACGAAATATGGCCTTGTTTTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTCAGAGTTACAGGGAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAATGTTTGTAGctg 989 0.4661 MDLDSIECVSSSDGMDEDEIQHHSLHPHPHHHSAFSSAKPRNGGTNNNIMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECAVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNVCS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01951 329 SUPERFAMILY TRAF domain-like 120 312 - -
Bva12g01951 329 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Bva12g01951 329 CDD Sina 181 309 - -
Bva12g01951 329 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 308 IPR008974 GO:0005515
Bva12g01951 329 CDD RING-HC_SIAHs 65 103 - -
Bva12g01951 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Bva12g01951 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 320 - -
Bva12g01951 329 Pfam Seven in absentia protein family 109 308 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bva12g01951 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 173 IPR013083 -
Bva12g01951 329 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 320 - -
Bva12g01951 329 SUPERFAMILY RING/U-box 59 106 - -
Bva12g01951 329 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270
Bva12g01951 329 MobiDBLite consensus disorder prediction 19 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01951 Bva-Chr12 15485251 15488188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01951 58 315 C3H Transcription Factor Family AT2G41980 80.620 4.76e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01951 K04506 - zju:107414770 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01951 12 15485251 15488188 Bva06g02975 06 18548058 18551573 ECH
Bva12g01951 12 15485251 15488188 Bva12g01951 12 15485251 15488188 ECH