Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01933 ATGGCCTTGTCAAGCCCGCGGATACAAAGATTCCTCTTGACTAAGTTCCATAGCCGCTCCACCTCCAAGACCTCTCACAGAAGCAGTTTTGCAATCACAAGCAGAAGCCGATGCTGCTCTGCCATAGCAATTGATGCCCCTTCATCTTTGACTGATGTAGCAGCTGTATTTGATGGCCATGGAGGATTCTCTTCGGTTCAGTTCCTCAGGGACGAGCTTTACAAGGAAATTCTTGTGGCTTTACAAGGTGGGGTACTGTTGGGTGGAAAAGATTTGAAAGCCATTAAAGAAGCATTACAACAGGCATTTGTAGAAGTTGACACAAGATTGTTAACCTGGCTTGAAATGAATGGAGAGGAGGACGAATCTGGTGCTACCGCAACTGCAATATTCATTGGAGAAGACAAGCTACTTGTTTCACATGTTGGAGACTCATCTGTGGTTCTGTGTAGATCTGGAAAAGCAGAAGTGCTGACTTCTCCCCACCGACCATATGGGAGCAACAAATCCTctcttgaagaaattaaaagaatcaGAGAAGCAGGTGGATGGATTGTCAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGGGCATTTGGGGACTTGcgattcaaaacaaagaagaatgaGATGCTGAGGAAAGGGGTCGAGGAAGGAAGATGgtcagaaaaatttatttctcgTGTACAGCTCAACAGTGACTTCATCGTTGCAAGGCCTGATATTTACCAAGCAAATCTTGGTTCAGATGCAGAGTTCATACTATTAGCATCTGATGGCTTATGGGACTACATGAGCAGCTCAGAGGCAGTTTCTTTTGTGAGGGATCAGCTTCGACAGCATGGTAATATTCAGCTAGCATGTGAAGCGCTTGCACAAGCGGCTCTGGACCAAGGCACACAAGATAATGTCAGCATTGTAATTGCAGATTTAGGGAAGACAGATTGGCAGAATTTGCCACTGCAGCAacaaaatgttatatatgaGCTGGTTCAAGCTTTTGCCACCATTGGAATTGTGTCGCTTGGGATTTGGTTTACGTCTCAGTTCTCCTTTTG 1061 0.4241 MALSSPRIQRFLLTKFHSRSTSKTSHRSSFAITSRSRCCSAIAIDAPSSLTDVAAVFDGHGGFSSVQFLRDELYKEILVALQGGVLLGGKDLKAIKEALQQAFVEVDTRLLTWLEMNGEEDESGATATAIFIGEDKLLVSHVGDSSVVLCRSGKAEVLTSPHRPYGSNKSSLEEIKRIREAGGWIVNGRICGDIAVSRAFGDLRFKTKKNEMLRKGVEEGRWSEKFISRVQLNSDFIVARPDIYQANLGSDAEFILLASDGLWDYMSSSEAVSFVRDQLRQHGNIQLACEALAQAALDQGTQDNVSIVIADLGKTDWQNLPLQQQNVIYELVQAFATIGIVSLGIWFTSQFSF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01933 353 ProSiteProfiles PPM-type phosphatase domain profile. 35 312 IPR001932 -
Bva12g01933 353 CDD PP2Cc 53 312 IPR001932 -
Bva12g01933 353 Pfam Protein phosphatase 2C 37 305 IPR001932 -
Bva12g01933 353 SMART PP2C_4 15 310 IPR001932 -
Bva12g01933 353 Gene3D - 30 319 IPR036457 -
Bva12g01933 353 PANTHER PROTEIN PHOSPHATASE 2C 53 349 IPR015655 GO:0004722|GO:0006470
Bva12g01933 353 PANTHER PROTEIN PHOSPHATASE 2C 57 53 349 - -
Bva12g01933 353 SUPERFAMILY PP2C-like 51 313 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01933 Bva-Chr12 15392052 15395892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01933 1 289 PP2C-type Phosphatase Gene Family AT4G27800 55.589 1.07e-122 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01933 K04457 - vra:106776113 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01933 12 15392052 15395892 Bva12g01933 12 15392052 15395892 ECH