Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01923 ATGGCTACCAGACGGAGGACTCATGCTTTGAAACCGGCTTCCAAAATCCCATTCTTGGATCCCGACGATGTGTGCTGCGAGCGGTGTGGGTCCGGGGAATCACCGGCTGAGTTGCTTCTCTGCGACCAGTGCGATCGAGGGTACCACCTATTCTGTCTCACACCTGTCCTCGTTTCTGTGCCTAAAGGGTCTTGGTTTTGTCCCACCTGCTCTAAGACCAAGAAGCTCAAATCTTTTCCTCTAGTTCAGACCaaaatcattgatttttttcgCATTCAACGTTCATCTGAATCTACCCAGGTAACAAGTCAAGACACccggaaaaaaagaaagcggGTTGGCAGCTTAGTGgtgtcaaaaaagaaaaggaaactacTTCCATTCTGCCCAAGTGAGGATCCTGCAAGGAGATTTGAACAGATGCAATCGCTGGCATCTGCATTGATATCCAATAATACAGAATTCAGTGACAAGATTACTTACATGCCTGGTATGGCACCAAGGTCAGCAAATCGGCCAGCTCTTGAGCAGGGCGGAATGCAGGTCTTGTCAAAAGAAGATACTGAGACCTTAAACTTATGCAAGAGAATGATGGAAAGAGGAGAATGTCCGCCCCTCGTGGTTGTATCTGATCCTCTCGAAGGGTTCACCGTTGAGGCTGATAGacatataaaagatttaaCAATAATCACAGAATATGTTGGAGATGTTGACTTTTTAAAGAATCGCAAGAATGATGATGGGGATAGCATAATGACGCTGCTTTACGCTTCTGATCCTTCACAGACTCTTGTTATCTGTCCAGATAAACACAGTAATATTGCCCGATTTATTAATGGCATCAACAATCACACACCggaaggaagaaaaaagcaaaacttGAAATGCGTGAGGTTTGATGTCGATGGTGAATGTCGGGTTCTTTTGATTGCCAACAGAGATATAGCAAAAGGCGAGAGATTATACTATGATTATAATGGATATGAGCATGAATATCCTACAGAACACTTCgtcta 1016 0.4055 MATRRRTHALKPASKIPFLDPDDVCCERCGSGESPAELLLCDQCDRGYHLFCLTPVLVSVPKGSWFCPTCSKTKKLKSFPLVQTKIIDFFRIQRSSESTQVTSQDTRKKRKRVGSLVVSKKKRKLLPFCPSEDPARRFEQMQSLASALISNNTEFSDKITYMPGMAPRSANRPALEQGGMQVLSKEDTETLNLCKRMMERGECPPLVVVSDPLEGFTVEADRHIKDLTIITEYVGDVDFLKNRKNDDGDSIMTLLYASDPSQTLVICPDKHSNIARFINGINNHTPEGRKKQNLKCVRFDVDGECRVLLIANRDIAKGERLYYDYNGYEHEYPTEHFV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01923 338 CDD SET_ATXR5_6-like 201 338 - -
Bva12g01923 338 ProSiteProfiles Zinc finger PHD-type profile. 23 73 IPR019787 -
Bva12g01923 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 80 IPR013083 -
Bva12g01923 338 ProSitePatterns Zinc finger PHD-type signature. 26 70 IPR019786 -
Bva12g01923 338 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 335 - -
Bva12g01923 338 SUPERFAMILY SET domain 195 326 IPR046341 -
Bva12g01923 338 Pfam PHD-finger 26 72 IPR019787 -
Bva12g01923 338 SMART PHD_3 25 71 IPR001965 -
Bva12g01923 338 CDD PHD_RSF1 26 70 - -
Bva12g01923 338 Gene3D SET domain 110 338 IPR046341 -
Bva12g01923 338 ProSiteProfiles SET domain profile. 204 326 IPR001214 GO:0005515
Bva12g01923 338 PANTHER HISTONE ACETYLTRANSFERASE 3 335 - -
Bva12g01923 338 SUPERFAMILY FYVE/PHD zinc finger 13 77 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01923 Bva-Chr12 15346426 15349555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01923 14 87 C2H2 Transcription Factor Family AT3G01460 36.486 9.27e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva12g01923 PHD 1.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01923 K24406 - jre:108994017 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01923 12 15346426 15349555 Bva12g01923 12 15346426 15349555 ECH