Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01912 ATGGCGAACCCAAGCTTTTTTACTTACGAGTTCCCGAACCATCCCTCCCAATCAAAACGAACAATCACAAAGAACAAGCCACGCCATCCTTCCACTGCTTCTCCTCGCACGTTCACATGTCAATACTGCAACCGCAGGTTCTATAGCTCCCAAGCTCTGGGCGGGCACCAAAATGCCCACAAACGAGAGAGAGCCGCAGCTAGGCAAAGCGTTTCTGCCCAGCAAGCTTGGTTTAGGGCTCCTACGCGCACCGGTGACCCCACGACCGAACCAATTTCAGGTCGTTTCTTCCACCCCCATTTGCTGCAATCTTTGGAGACTGACCAAGACACGGGTGCAAGTTCACTTCCTTTTGGGTTTCATGGCATCGGCGTCTCCAGCTCTGAGGTTCTCCCTCTTAAGCCCGAGCAGCACACAAACGTTGACCTCACCCTTCGCTTGTG 443 0.535 MANPSFFTYEFPNHPSQSKRTITKNKPRHPSTASPRTFTCQYCNRRFYSSQALGGHQNAHKRERAAARQSVSAQQAWFRAPTRTGDPTTEPISGRFFHPHLLQSLETDQDTGASSLPFGFHGIGVSSSEVLPLKPEQHTNVDLTLRL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01912 147 MobiDBLite consensus disorder prediction 68 89 - -
Bva12g01912 147 PANTHER ZINC FINGER PROTEIN JAGGED 21 100 IPR045320 GO:0003700
Bva12g01912 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Bva12g01912 147 Pfam C2H2-type zinc finger 38 62 - -
Bva12g01912 147 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Bva12g01912 147 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g01912 147 PANTHER ZINC FINGER PROTEIN KNUCKLES 21 100 - -
Bva12g01912 147 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Bva12g01912 147 MobiDBLite consensus disorder prediction 1 34 - -
Bva12g01912 147 MobiDBLite consensus disorder prediction 54 89 - -
Bva12g01912 147 Gene3D Classic Zinc Finger 13 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01912 Bva-Chr12 15289562 15290005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01912 35 96 C2H2 Transcription Factor Family AT5G57520 53.226 3.49e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g01912 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01912 - - csin:114315809 85.1149